rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits
Porto, Diego S., Tarasov, Sergei, Charpentier, Caleb, Lapp, Hilmar, Balhoff, James P., Vision, Todd J., Dahdul, Wasila M., Mabee, Paula M., Uyeda, Josef
Published in Methods in ecology and evolution (01.10.2023)
Published in Methods in ecology and evolution (01.10.2023)
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Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
Haendel, Melissa A, Balhoff, James P, Bastian, Frederic B, Blackburn, David C, Blake, Judith A, Bradford, Yvonne, Comte, Aurelie, Dahdul, Wasila M, Dececchi, Thomas A, Druzinsky, Robert E, Hayamizu, Terry F, Ibrahim, Nizar, Lewis, Suzanna E, Mabee, Paula M, Niknejad, Anne, Robinson-Rechavi, Marc, Sereno, Paul C, Mungall, Christopher J
Published in Journal of biomedical semantics (19.05.2014)
Published in Journal of biomedical semantics (19.05.2014)
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Journal Article
The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age
Dahdul, Wasila M., Lundberg, John G., Midford, Peter E., Balhoff, James P., Lapp, Hilmar, Vision, Todd J., Haendel, Melissa A., Westerfield, Monte, Mabee, Paula M.
Published in Systematic biology (01.07.2010)
Published in Systematic biology (01.07.2010)
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Journal Article
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature
Dahdul, Wasila M, Balhoff, James P, Engeman, Jeffrey, Grande, Terry, Hilton, Eric J, Kothari, Cartik, Lapp, Hilmar, Lundberg, John G, Midford, Peter E, Vision, Todd J, Westerfield, Monte, Mabee, Paula M
Published in PloS one (20.05.2010)
Published in PloS one (20.05.2010)
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Journal Article
A unified anatomy ontology of the vertebrate skeletal system
Dahdul, Wasila M, Balhoff, James P, Blackburn, David C, Diehl, Alexander D, Haendel, Melissa A, Hall, Brian K, Lapp, Hilmar, Lundberg, John G, Mungall, Christopher J, Ringwald, Martin, Segerdell, Erik, Van Slyke, Ceri E, Vickaryous, Matthew K, Westerfield, Monte, Mabee, Paula M
Published in PloS one (10.12.2012)
Published in PloS one (10.12.2012)
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Journal Article
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals
Druzinsky, Robert E, Balhoff, James P, Crompton, Alfred W, Done, James, German, Rebecca Z, Haendel, Melissa A, Herrel, Anthony, Herring, Susan W, Lapp, Hilmar, Mabee, Paula M, Muller, Hans-Michael, Mungall, Christopher J, Sternberg, Paul W, Van Auken, Kimberly, Vinyard, Christopher J, Williams, Susan H, Wall, Christine E
Published in PloS one (12.02.2016)
Published in PloS one (12.02.2016)
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Journal Article
Emerging semantics to link phenotype and environment
Thessen, Anne E, Bunker, Daniel E, Buttigieg, Pier Luigi, Cooper, Laurel D, Dahdul, Wasila M, Domisch, Sami, Franz, Nico M, Jaiswal, Pankaj, Lawrence-Dill, Carolyn J, Midford, Peter E, Mungall, Christopher J, Ramírez, Martín J, Specht, Chelsea D, Vogt, Lars, Vos, Rutger Aldo, Walls, Ramona L, White, Jeffrey W, Zhang, Guanyang, Deans, Andrew R, Huala, Eva, Lewis, Suzanna E, Mabee, Paula M
Published in PeerJ (San Francisco, CA) (14.12.2015)
Published in PeerJ (San Francisco, CA) (14.12.2015)
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Journal Article
Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies
Dececchi, T. Alexander, Balhoff, James P., Lapp, Hilmar, Mabee, Paula M.
Published in Systematic biology (01.11.2015)
Published in Systematic biology (01.11.2015)
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Journal Article
A Logical Model of Homology for Comparative Biology
Mabee, Paula M., Balhoff, James P., Dahdul, Wasila M., Lapp, Hilmar, Mungall, Christopher J., Vision, Todd J.
Published in Systematic biology (01.03.2020)
Published in Systematic biology (01.03.2020)
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Journal Article
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes
Edmunds, Richard C, Su, Baofeng, Balhoff, James P, Eames, B Frank, Dahdul, Wasila M, Lapp, Hilmar, Lundberg, John G, Vision, Todd J, Dunham, Rex A, Mabee, Paula M, Westerfield, Monte
Published in Molecular biology and evolution (01.01.2016)
Published in Molecular biology and evolution (01.01.2016)
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Journal Article
The US National Ecological Observatory Network and the Global Biodiversity Framework: national research infrastructure with a global reach
Thibault, Katherine M., Laney, Christine M., Yule, Kelsey M., Franz, Nico M., Mabee, Paula M.
Published in Journal of Ecology and Environment (14.12.2023)
Published in Journal of Ecology and Environment (14.12.2023)
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Journal Article
Phenotype ontologies: the bridge between genomics and evolution
Mabee, Paula M., Ashburner, Michael, Cronk, Quentin, Gkoutos, Georgios V., Haendel, Melissa, Segerdell, Erik, Mungall, Chris, Westerfield, Monte
Published in Trends in ecology & evolution (Amsterdam) (01.07.2007)
Published in Trends in ecology & evolution (Amsterdam) (01.07.2007)
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Journal Article
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems
Dahdul, Wasila, Manda, Prashanti, Cui, Hong, Balhoff, James P, Dececchi, T Alexander, Ibrahim, Nizar, Lapp, Hilmar, Vision, Todd, Mabee, Paula M
Published in Database : the journal of biological databases and curation (01.01.2018)
Published in Database : the journal of biological databases and curation (01.01.2018)
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