New keys to unlock the treasure trove of microbial natural products
Udwary, Daniel W., Otani, Hiroshi, Mouncey, Nigel J.
Published in Nature reviews. Microbiology (01.11.2021)
Published in Nature reviews. Microbiology (01.11.2021)
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A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles
Volland, Jean-Marie, Gonzalez-Rizzo, Silvina, Gros, Olivier, Tyml, Tomáš, Ivanova, Natalia, Schulz, Frederik, Goudeau, Danielle, Elisabeth, Nathalie H., Nath, Nandita, Udwary, Daniel, Malmstrom, Rex R., Guidi-Rontani, Chantal, Bolte-Kluge, Susanne, Davies, Karen M., Jean, Maïtena R., Mansot, Jean-Louis, Mouncey, Nigel J., Angert, Esther R., Woyke, Tanja, Date, Shailesh V.
Published in Science (American Association for the Advancement of Science) (24.06.2022)
Published in Science (American Association for the Advancement of Science) (24.06.2022)
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IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase
Palaniappan, Krishnaveni, Chen, I-Min A, Chu, Ken, Ratner, Anna, Seshadri, Rekha, Kyrpides, Nikos C, Ivanova, Natalia N, Mouncey, Nigel J
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Compendium of Metabolomic and Genomic Datasets for Cyanobacteria: Mined the Gap
Ferrinho, Scarlet, Connaris, Helen, Mouncey, Nigel J., Goss, Rebecca J.M.
Published in Water research (Oxford) (01.06.2024)
Published in Water research (Oxford) (01.06.2024)
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Cytochromes P450 involved in bacterial RiPP biosyntheses
Kunakom, Sylvia, Otani, Hiroshi, Udwary, Daniel W, Doering, Drew T, Mouncey, Nigel J
Published in Journal of industrial microbiology & biotechnology (17.02.2023)
Published in Journal of industrial microbiology & biotechnology (17.02.2023)
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The National Microbiome Data Collaborative: enabling microbiome science
Wood-Charlson, Elisha M., Anubhav, Auberry, Deanna, Blanco, Hannah, Borkum, Mark I., Corilo, Yuri E., Davenport, Karen W., Deshpande, Shweta, Devarakonda, Ranjeet, Drake, Meghan, Duncan, William D., Flynn, Mark C., Hays, David, Hu, Bin, Huntemann, Marcel, Li, Po-E, Lipton, Mary, Lo, Chien-Chi, Millard, David, Miller, Kayd, Piehowski, Paul D., Purvine, Samuel, Reddy, T.B.K., Shakya, Migun, Sundaramurthi, Jagadish Chandrabose, Vangay, Pajau, Wei, Yaxing, Wilson, Bruce E., Canon, Shane, Chain, Patrick S. G., Fagnan, Kjiersten, Martin, Stanton, McCue, Lee Ann, Mungall, Christopher J., Mouncey, Nigel J., Maxon, Mary E., Eloe-Fadrosh, Emiley A.
Published in Nature reviews. Microbiology (01.06.2020)
Published in Nature reviews. Microbiology (01.06.2020)
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New voyages to explore the natural product galaxy
Mouncey, Nigel J., Otani, Hiroshi, Udwary, Daniel, Yoshikuni, Yasuo
Published in Journal of industrial microbiology & biotechnology (01.03.2019)
Published in Journal of industrial microbiology & biotechnology (01.03.2019)
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Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery
Hurley, Amanda, Chevrette, Marc G, Acharya, Deepa D, Lozano, Gabriel L, Garavito, Manuel, Heinritz, Jen, Balderrama, Luis, Beebe, Mara, DenHartog, Martel L, Corinaldi, Kamiyah, Engels, Renee, Gutierrez, Alyssa, Jona, Orli, Putnam, Josephine H I, Rhodes, Brody, Tsang, Tiffany, Hernandez, Simon, Bascom-Slack, Carol, Blum, Jessamina E, Price, Paul A, Davis, Debra, Klein, Joanna, Pultorak, Joshua, Sullivan, Nora L, Mouncey, Nigel J, Dorrestein, Pieter C, Miller, Sarah, Broderick, Nichole A, Handelsman, Jo
Published in mBio (16.02.2021)
Published in mBio (16.02.2021)
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Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE
Ke, Jing, Zhao, Zhiying, Coates, Cameron R., Hadjithomas, Michalis, Kuftin, Andrea, Louie, Katherine, Weller, David, Thomashow, Linda, Mouncey, Nigel J., Northen, Trent R., Yoshikuni, Yasuo
Published in Metabolic engineering (01.01.2022)
Published in Metabolic engineering (01.01.2022)
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Metabolic Engineering of Gluconobacter oxydans for Improved Growth Rate and Growth Yield on Glucose by Elimination of Gluconate Formation
KRAJEWSKI, Vera, SIMIC, Petra, MOUNCEY, Nigel J, BRINGER, Stephanie, SAHM, Hermann, BOTT, Michael
Published in Applied and Environmental Microbiology (01.07.2010)
Published in Applied and Environmental Microbiology (01.07.2010)
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CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria
Wang, Gaoyan, Zhao, Zhiying, Ke, Jing, Engel, Yvonne, Shi, Yi-Ming, Robinson, David, Bingol, Kerem, Zhang, Zheyun, Bowen, Benjamin, Louie, Katherine, Wang, Bing, Evans, Robert, Miyamoto, Yu, Cheng, Kelly, Kosina, Suzanne, De Raad, Markus, Silva, Leslie, Luhrs, Alicia, Lubbe, Andrea, Hoyt, David W., Francavilla, Charles, Otani, Hiroshi, Deutsch, Samuel, Washton, Nancy M., Rubin, Edward M., Mouncey, Nigel J., Visel, Axel, Northen, Trent, Cheng, Jan-Fang, Bode, Helge B., Yoshikuni, Yasuo
Published in Nature microbiology (01.12.2019)
Published in Nature microbiology (01.12.2019)
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Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota
Oliver, Tiffany, Varghese, Neha, Roux, Simon, Schulz, Frederik, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Riley, Robert, LaButti, Kurt, Egan, Robert, Hajek, Patrick, Mukherjee, Supratim, Ovchinnikova, Galina, Reddy, T. B. K., Calhoun, Sara, Hayes, Richard D., Rohwer, Robin R., Zhou, Zhichao, Daum, Chris, Copeland, Alex, Chen, I-Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Mouncey, Nigel J., del Rio, Tijana Glavina, Grigoriev, Igor V., Hofmeyr, Steven, Oliker, Leonid, Yelick, Katherine, Anantharaman, Karthik, McMahon, Katherine D., Woyke, Tanja, Eloe-Fadrosh, Emiley A.
Published in Scientific data (04.09.2024)
Published in Scientific data (04.09.2024)
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Phylogenomics and genetic analysis of solvent-producing Clostridium species
Jensen, Rasmus O., Schulz, Frederik, Roux, Simon, Klingeman, Dawn M., Mitchell, Wayne P., Udwary, Daniel, Moraïs, Sarah, Reynoso, Vinicio, Winkler, James, Nagaraju, Shilpa, De Tissera, Sashini, Shapiro, Nicole, Ivanova, Natalia, Reddy, T. B. K., Mizrahi, Itzhak, Utturkar, Sagar M., Bayer, Edward A., Woyke, Tanja, Mouncey, Nigel J., Jewett, Michael C., Simpson, Séan D., Köpke, Michael, Jones, David T., Brown, Steven D.
Published in Scientific data (01.05.2024)
Published in Scientific data (01.05.2024)
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An integrated workflow for phenazine-modifying enzyme characterization
Coates, R. Cameron, Bowen, Benjamin P., Oberortner, Ernst, Thomashow, Linda, Hadjithomas, Michalis, Zhao, Zhiying, Ke, Jing, Silva, Leslie, Louie, Katherine, Wang, Gaoyan, Robinson, David, Tarver, Angela, Hamilton, Matthew, Lubbe, Andrea, Feltcher, Meghan, Dangl, Jeffery L., Pati, Amrita, Weller, David, Northen, Trent R., Cheng, Jan-Fang, Mouncey, Nigel J., Deutsch, Samuel, Yoshikuni, Yasuo
Published in Journal of industrial microbiology & biotechnology (01.07.2018)
Published in Journal of industrial microbiology & biotechnology (01.07.2018)
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
Seshadri, Rekha, Roux, Simon, Huber, Katharina J., Wu, Dongying, Yu, Sora, Udwary, Dan, Call, Lee, Nayfach, Stephen, Hahnke, Richard L., Pukall, Rüdiger, White, James R., Varghese, Neha J., Webb, Cody, Palaniappan, Krishnaveni, Reimer, Lorenz C., Sardà, Joaquim, Bertsch, Jonathon, Mukherjee, Supratim, Reddy, T.B.K., Hajek, Patrick P., Huntemann, Marcel, Chen, I-Min A., Spunde, Alex, Clum, Alicia, Shapiro, Nicole, Wu, Zong-Yen, Zhao, Zhiying, Zhou, Yuguang, Evtushenko, Lyudmila, Thijs, Sofie, Stevens, Vincent, Eloe-Fadrosh, Emiley A., Mouncey, Nigel J., Yoshikuni, Yasuo, Whitman, William B., Klenk, Hans-Peter, Woyke, Tanja, Göker, Markus, Kyrpides, Nikos C., Ivanova, Natalia N.
Published in Cell genomics (14.12.2022)
Published in Cell genomics (14.12.2022)
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Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale
Hu, Bin, Canon, Shane, Eloe-Fadrosh, Emiley A., Anubhav, Babinski, Michal, Corilo, Yuri, Davenport, Karen, Duncan, William D., Fagnan, Kjiersten, Flynn, Mark, Foster, Brian, Hays, David, Huntemann, Marcel, Jackson, Elais K. Player, Kelliher, Julia, Li, Po-E., Lo, Chien-Chi, Mans, Douglas, McCue, Lee Ann, Mouncey, Nigel, Mungall, Christopher J., Piehowski, Paul D., Purvine, Samuel O., Smith, Montana, Varghese, Neha Jacob, Winston, Donald, Xu, Yan, Chain, Patrick S. G.
Published in Frontiers in bioinformatics (17.01.2022)
Published in Frontiers in bioinformatics (17.01.2022)
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The emergence of microbiome centres
Martiny, Jennifer B. H., Whiteson, Katrine L., Bohannan, Brendan J. M., David, Lawrence A., Hynson, Nicole A., McFall-Ngai, Margaret, Rawls, John F., Schmidt, Thomas M., Abdo, Zaid, Blaser, Martin J., Bordenstein, Seth, Bréchot, Christian, Bull, Carolee T., Dorrestein, Pieter, Eisen, Jonathan A., Garcia-Pichel, Ferran, Gilbert, Jack, Hofmockel, Kirsten S., Holtz, Mary L., Knight, Rob, Mark Welch, David B., McDonald, Daniel, Methé, Barbara, Mouncey, Nigel J., Mueller, Noel T., Pfister, Catherine A., Proctor, Lita, Sachs, Joel L.
Published in Nature microbiology (01.01.2020)
Published in Nature microbiology (01.01.2020)
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A genomic catalog of Earth’s microbiomes
Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I-Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T. B. K., Nielsen, Torben, Kirton, Edward, Faria, José P., Edirisinghe, Janaka N., Henry, Christopher S., Jungbluth, Sean P., Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam P., Tringe, Susannah G., Visel, Axel, Woyke, Tanja, Mouncey, Nigel J., Ivanova, Natalia N., Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A.
Published in Nature biotechnology (01.04.2021)
Published in Nature biotechnology (01.04.2021)
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