Cytoscape Automation: empowering workflow-based network analysis
Otasek, David, Morris, John H, Bouças, Jorge, Pico, Alexander R, Demchak, Barry
Published in Genome Biology (02.09.2019)
Published in Genome Biology (02.09.2019)
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Journal Article
Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data
Doncheva, Nadezhda T, Morris, John H, Gorodkin, Jan, Jensen, Lars J
Published in Journal of proteome research (01.02.2019)
Published in Journal of proteome research (01.02.2019)
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Journal Article
UCSF ChimeraX: Tools for structure building and analysis
Meng, Elaine C., Goddard, Thomas D., Pettersen, Eric F., Couch, Greg S., Pearson, Zach J., Morris, John H., Ferrin, Thomas E.
Published in Protein science (01.11.2023)
Published in Protein science (01.11.2023)
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Journal Article
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E
Published in BMC bioinformatics (09.11.2011)
Published in BMC bioinformatics (09.11.2011)
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Journal Article
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
Pettersen, Eric F., Goddard, Thomas D., Huang, Conrad C., Meng, Elaine C., Couch, Gregory S., Croll, Tristan I., Morris, John H., Ferrin, Thomas E.
Published in Protein science (01.01.2021)
Published in Protein science (01.01.2021)
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Journal Article
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
Goddard, Thomas D., Huang, Conrad C., Meng, Elaine C., Pettersen, Eric F., Couch, Gregory S., Morris, John H., Ferrin, Thomas E.
Published in Protein science (01.01.2018)
Published in Protein science (01.01.2018)
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Journal Article
Identification of Sox9-Dependent Acinar-to-Ductal Reprogramming as the Principal Mechanism for Initiation of Pancreatic Ductal Adenocarcinoma
Kopp, Janel L., von Figura, Guido, Mayes, Erin, Liu, Fen-Fen, Dubois, Claire L., Morris, John P., Pan, Fong Cheng, Akiyama, Haruhiko, Wright, Christopher V.E., Jensen, Kristin, Hebrok, Matthias, Sander, Maike
Published in Cancer cell (11.12.2012)
Published in Cancer cell (11.12.2012)
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Journal Article
A gene–environment-induced epigenetic program initiates tumorigenesis
Alonso-Curbelo, Direna, Ho, Yu-Jui, Burdziak, Cassandra, Maag, Jesper L. V., Morris, John P., Chandwani, Rohit, Chen, Hsuan-An, Tsanov, Kaloyan M., Barriga, Francisco M., Luan, Wei, Tasdemir, Nilgun, Livshits, Geulah, Azizi, Elham, Chun, Jaeyoung, Wilkinson, John E., Mazutis, Linas, Leach, Steven D., Koche, Richard, Pe’er, Dana, Lowe, Scott W.
Published in Nature (London) (25.02.2021)
Published in Nature (London) (25.02.2021)
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Journal Article
Alzheimer's disease: the challenge of the second century
Holtzman, David M, Morris, John C, Goate, Alison M
Published in Science translational medicine (06.04.2011)
Published in Science translational medicine (06.04.2011)
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Journal Article
Mutant p53 drives pancreatic cancer metastasis through cell-autonomous PDGF receptor β signaling
Weissmueller, Susann, Manchado, Eusebio, Saborowski, Michael, Morris, 4th, John P, Wagenblast, Elvin, Davis, Carrie A, Moon, Sung-Hwan, Pfister, Neil T, Tschaharganeh, Darjus F, Kitzing, Thomas, Aust, Daniela, Markert, Elke K, Wu, Jianmin, Grimmond, Sean M, Pilarsky, Christian, Prives, Carol, Biankin, Andrew V, Lowe, Scott W
Published in Cell (10.04.2014)
Published in Cell (10.04.2014)
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Journal Article
A combinatorial strategy for treating KRAS-mutant lung cancer
Manchado, Eusebio, Weissmueller, Susann, Morris, John P., Chen, Chi-Chao, Wullenkord, Ramona, Lujambio, Amaia, de Stanchina, Elisa, Poirier, John T., Gainor, Justin F., Corcoran, Ryan B., Engelman, Jeffrey A., Rudin, Charles M., Rosen, Neal, Lowe, Scott W.
Published in Nature (London) (30.06.2016)
Published in Nature (London) (30.06.2016)
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Journal Article
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible
Szklarczyk, Damian, Morris, John H, Cook, Helen, Kuhn, Michael, Wyder, Stefan, Simonovic, Milan, Santos, Alberto, Doncheva, Nadezhda T, Roth, Alexander, Bork, Peer, Jensen, Lars J, von Mering, Christian
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
Biological network exploration with Cytoscape 3
Su, Gang, Morris, John H, Demchak, Barry, Bader, Gary D
Published in Current protocols in bioinformatics (08.09.2014)
Published in Current protocols in bioinformatics (08.09.2014)
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Journal Article
Functional connectivity and graph theory in preclinical Alzheimer's disease
Brier, Matthew R, Thomas, Jewell B, Fagan, Anne M, Hassenstab, Jason, Holtzman, David M, Benzinger, Tammie L, Morris, John C, Ances, Beau M
Published in Neurobiology of aging (01.04.2014)
Published in Neurobiology of aging (01.04.2014)
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Journal Article
Stat3 and MMP7 Contribute to Pancreatic Ductal Adenocarcinoma Initiation and Progression
Fukuda, Akihisa, Wang, Sam C., Morris, John P., Folias, Alexandra E., Liou, Angela, Kim, Grace E., Akira, Shizuo, Boucher, Kenneth M., Firpo, Matthew A., Mulvihill, Sean J., Hebrok, Matthias
Published in Cancer cell (12.04.2011)
Published in Cancer cell (12.04.2011)
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Journal Article