Neuropilin-1 is a host factor for SARS-CoV-2 infection
Daly, James L, Simonetti, Boris, Klein, Katja, Chen, Kai-En, Williamson, Maia Kavanagh, Antón-Plágaro, Carlos, Shoemark, Deborah K, Simón-Gracia, Lorena, Bauer, Michael, Hollandi, Reka, Greber, Urs F, Horvath, Peter, Sessions, Richard B, Helenius, Ari, Hiscox, Julian A, Teesalu, Tambet, Matthews, David A, Davidson, Andrew D, Collins, Brett M, Cullen, Peter J, Yamauchi, Yohei
Published in Science (13.11.2020)
Published in Science (13.11.2020)
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Characterisation of the transcriptome and proteome of SARS-CoV-2 reveals a cell passage induced in-frame deletion of the furin-like cleavage site from the spike glycoprotein
Davidson, Andrew D, Williamson, Maia Kavanagh, Lewis, Sebastian, Shoemark, Deborah, Carroll, Miles W, Heesom, Kate J, Zambon, Maria, Ellis, Joanna, Lewis, Philip A, Hiscox, Julian A, Matthews, David A
Published in Genome medicine (28.07.2020)
Published in Genome medicine (28.07.2020)
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The furin cleavage site in the SARS-CoV-2 spike protein is required for transmission in ferrets
Peacock, Thomas P., Goldhill, Daniel H., Zhou, Jie, Baillon, Laury, Frise, Rebecca, Swann, Olivia C., Kugathasan, Ruthiran, Penn, Rebecca, Brown, Jonathan C., Sanchez-David, Raul Y., Braga, Luca, Williamson, Maia Kavanagh, Hassard, Jack A., Staller, Ecco, Hanley, Brian, Osborn, Michael, Giacca, Mauro, Davidson, Andrew D., Matthews, David A., Barclay, Wendy S.
Published in Nature microbiology (01.07.2021)
Published in Nature microbiology (01.07.2021)
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TMPRSS2 promotes SARS-CoV-2 evasion from NCOA7-mediated restriction
Khan, Hataf, Winstone, Helena, Jimenez-Guardeño, Jose M, Graham, Carl, Doores, Katie J, Goujon, Caroline, Matthews, David A, Davidson, Andrew D, Rihn, Suzannah J, Palmarini, Massimo, Neil, Stuart J D, Malim, Michael H
Published in PLoS pathogens (22.11.2021)
Published in PLoS pathogens (22.11.2021)
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SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription
Almuqrin, Abdulaziz, Davidson, Andrew D, Williamson, Maia Kavanagh, Lewis, Philip A, Heesom, Kate J, Morris, Susan, Gilbert, Sarah C, Matthews, David A
Published in Genome medicine (15.03.2021)
Published in Genome medicine (15.03.2021)
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Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs
Ugolini, Camilla, Mulroney, Logan, Leger, Adrien, Castelli, Matteo, Criscuolo, Elena, Williamson, Maia Kavanagh, Davidson, Andrew D, Almuqrin, Abdulaziz, Giambruno, Roberto, Jain, Miten, Frigè, Gianmaria, Olsen, Hugh, Tzertzinis, George, Schildkraut, Ira, Wulf, Madalee G, Corrêa, Ivan R, Ettwiller, Laurence, Clementi, Nicola, Clementi, Massimo, Mancini, Nicasio, Birney, Ewan, Akeson, Mark, Nicassio, Francesco, Matthews, David A, Leonardi, Tommaso
Published in Nucleic acids research (08.04.2022)
Published in Nucleic acids research (08.04.2022)
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Structural insights in cell-type specific evolution of intra-host diversity by SARS-CoV-2
Gupta, Kapil, Toelzer, Christine, Williamson, Maia Kavanagh, Shoemark, Deborah K., Oliveira, A. Sofia F., Matthews, David A., Almuqrin, Abdulaziz, Staufer, Oskar, Yadav, Sathish K. N., Borucu, Ufuk, Garzoni, Frederic, Fitzgerald, Daniel, Spatz, Joachim, Mulholland, Adrian J., Davidson, Andrew D., Schaffitzel, Christiane, Berger, Imre
Published in Nature communications (11.01.2022)
Published in Nature communications (11.01.2022)
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Voluntary risk mitigation behaviour can reduce impact of SARS-CoV-2: a real-time modelling study of the January 2022 Omicron wave in England
Brooks-Pollock, Ellen, Northstone, Kate, Pellis, Lorenzo, Scarabel, Francesca, Thomas, Amy, Nixon, Emily, Matthews, David A, Bowyer, Vicky, Garcia, Maria Paz, Steves, Claire J, Timpson, Nicholas J, Danon, Leon
Published in BMC medicine (19.01.2023)
Published in BMC medicine (19.01.2023)
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High-throughput quantitative proteomic analysis of dengue virus type 2 infected A549 cells
Chiu, Han-Chen, Hannemann, Holger, Heesom, Kate J, Matthews, David A, Davidson, Andrew D
Published in PloS one (26.03.2014)
Published in PloS one (26.03.2014)
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Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism
Moore, Shona C, Penrice-Randal, Rebekah, Alruwaili, Muhannad, Randle, Nadine, Armstrong, Stuart, Hartley, Catherine, Haldenby, Sam, Dong, Xiaofeng, Alrezaihi, Abdulrahman, Almsaud, Mai, Bentley, Eleanor, Clark, Jordan, García-Dorival, Isabel, Gilmore, Paul, Han, Ximeng, Jones, Benjamin, Luu, Lisa, Sharma, Parul, Shawli, Ghada, Sun, Yani, Zhao, Qin, Pullan, Steven T, Carter, Daniel P, Bewley, Kevin, Dunning, Jake, Zhou, En-Min, Solomon, Tom, Beadsworth, Michael, Cruise, James, Crook, Derrick W, Matthews, David A, Davidson, Andrew D, Mahmood, Zana, Aljabr, Waleed, Druce, Julian, Vipond, Richard, Ng, Lisa, Renia, Laurent, Openshaw, Peter J M, Baillie, J Kenneth, Carroll, Miles W, Stewart, James, Darby, Alistair, Semple, Malcolm, Turtle, Lance, Hiscox, Julian A
Published in Viruses (14.10.2020)
Published in Viruses (14.10.2020)
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Variation around the dominant viral genome sequence contributes to viral load and outcome in patients with Ebola virus disease
Dong, Xiaofeng, Munoz-Basagoiti, Jordana, Rickett, Natasha Y, Pollakis, Georgios, Paxton, William A, Günther, Stephan, Kerber, Romy, Ng, Lisa F P, Elmore, Michael J, Magassouba, N'faly, Carroll, Miles W, Matthews, David A, Hiscox, Julian A
Published in Genome Biology (07.09.2020)
Published in Genome Biology (07.09.2020)
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Investigating the Influence of Ribavirin on Human Respiratory Syncytial Virus RNA Synthesis by Using a High-Resolution Transcriptome Sequencing Approach
Aljabr, Waleed, Touzelet, Olivier, Pollakis, Georgios, Wu, Weining, Munday, Diane C, Hughes, Margaret, Hertz-Fowler, Christiane, Kenny, John, Fearns, Rachel, Barr, John N, Matthews, David A, Hiscox, Julian A
Published in Journal of virology (15.05.2016)
Published in Journal of virology (15.05.2016)
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Nucleolar proteomics and viral infection
Hiscox, Julian A, Whitehouse, Adrian, Matthews, David A
Published in Proteomics (Weinheim) (01.11.2010)
Published in Proteomics (Weinheim) (01.11.2010)
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The Interactome of the Human Respiratory Syncytial Virus NS1 Protein Highlights Multiple Effects on Host Cell Biology
WEINING WU, TRAN, Kim C, TENG, Michael N, HEESOM, Kate J, MATTHEWS, David A, BARR, John N, HISCOX, Julian A
Published in Journal of Virology (01.08.2012)
Published in Journal of Virology (01.08.2012)
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Quantitative Proteomics Using SILAC Coupled to LC−MS/MS Reveals Changes in the Nucleolar Proteome in Influenza A Virus-Infected Cells
Emmott, Edward, Wise, Helen, Loucaides, Eva M, Matthews, David A, Digard, Paul, Hiscox, Julian A
Published in Journal of proteome research (01.10.2010)
Published in Journal of proteome research (01.10.2010)
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Whole-lake nitrate addition for control of methylmercury in mercury-contaminated Onondaga Lake, NY
Matthews, David A., Babcock, David B., Nolan, John G., Prestigiacomo, Anthony R., Effler, Steven W., Driscoll, Charles T., Todorova, Svetoslava G., Kuhr, Kenneth M.
Published in Environmental research (01.08.2013)
Published in Environmental research (01.08.2013)
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Proteomics Analysis of the Nucleolus in Adenovirus-infected Cells
Lam, Yun W., Evans, Vanessa C., Heesom, Kate J., Lamond, Angus I., Matthews, David A.
Published in Molecular & cellular proteomics (01.01.2010)
Published in Molecular & cellular proteomics (01.01.2010)
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Sequential Infection with Influenza A Virus Followed by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Leads to More Severe Disease and Encephalitis in a Mouse Model of COVID-19
Clark, Jordan J, Penrice-Randal, Rebekah, Sharma, Parul, Dong, Xiaofeng, Pennington, Shaun H, Marriott, Amy E, Colombo, Stefano, Davidson, Andrew, Kavanagh Williamson, Maia, Matthews, David A, Turtle, Lance, Prince, Tessa, Hughes, Grant L, Patterson, Edward I, Shawli, Ghada, Mega, Daniele F, Subramaniam, Krishanthi, Sharp, Jo, Turner, Joseph D, Biagini, Giancarlo A, Owen, Andrew, Kipar, Anja, Hiscox, Julian A, Stewart, James P
Published in Viruses (28.05.2024)
Published in Viruses (28.05.2024)
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High Resolution Analysis of Respiratory Syncytial Virus Infection In Vivo
Aljabr, Waleed, Armstrong, Stuart, Rickett, Natasha Y., Pollakis, Georgios, Touzelet, Olivier, Cloutman-Green, Elaine, Matthews, David A., Hiscox, Julian A.
Published in Viruses (10.10.2019)
Published in Viruses (10.10.2019)
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