Deep learning algorithms out-perform veterinary pathologists in detecting the mitotically most active tumor region
Aubreville, Marc, Bertram, Christof A., Marzahl, Christian, Gurtner, Corinne, Dettwiler, Martina, Schmidt, Anja, Bartenschlager, Florian, Merz, Sophie, Fragoso, Marco, Kershaw, Olivia, Klopfleisch, Robert, Maier, Andreas
Published in Scientific reports (05.10.2020)
Published in Scientific reports (05.10.2020)
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Journal Article
EXACT: a collaboration toolset for algorithm-aided annotation of images with annotation version control
Marzahl, Christian, Aubreville, Marc, Bertram, Christof A., Maier, Jennifer, Bergler, Christian, Kröger, Christine, Voigt, Jörn, Breininger, Katharina, Klopfleisch, Robert, Maier, Andreas
Published in Scientific reports (23.02.2021)
Published in Scientific reports (23.02.2021)
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Journal Article
Deep Learning-Based Quantification of Pulmonary Hemosiderophages in Cytology Slides
Marzahl, Christian, Aubreville, Marc, Bertram, Christof A., Stayt, Jason, Jasensky, Anne-Katherine, Bartenschlager, Florian, Fragoso-Garcia, Marco, Barton, Ann K., Elsemann, Svenja, Jabari, Samir, Krauth, Jens, Madhu, Prathmesh, Voigt, Jörn, Hill, Jenny, Klopfleisch, Robert, Maier, Andreas
Published in Scientific reports (03.08.2020)
Published in Scientific reports (03.08.2020)
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Journal Article
Pan-tumor CAnine cuTaneous Cancer Histology (CATCH) dataset
Wilm, Frauke, Fragoso, Marco, Marzahl, Christian, Qiu, Jingna, Puget, Chloé, Diehl, Laura, Bertram, Christof A., Klopfleisch, Robert, Maier, Andreas, Breininger, Katharina, Aubreville, Marc
Published in Scientific data (27.09.2022)
Published in Scientific data (27.09.2022)
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Journal Article
Inter-species cell detection - datasets on pulmonary hemosiderophages in equine, human and feline specimens
Marzahl, Christian, Hill, Jenny, Stayt, Jason, Bienzle, Dorothee, Welker, Lutz, Wilm, Frauke, Voigt, Jörn, Aubreville, Marc, Maier, Andreas, Klopfleisch, Robert, Breininger, Katharina, Bertram, Christof A.
Published in Scientific data (03.06.2022)
Published in Scientific data (03.06.2022)
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Journal Article
Mitosis domain generalization in histopathology images — The MIDOG challenge
Aubreville, Marc, Stathonikos, Nikolas, Bertram, Christof A., Klopfleisch, Robert, ter Hoeve, Natalie, Ciompi, Francesco, Wilm, Frauke, Marzahl, Christian, Donovan, Taryn A., Maier, Andreas, Breen, Jack, Ravikumar, Nishant, Chung, Youjin, Park, Jinah, Nateghi, Ramin, Pourakpour, Fattaneh, Fick, Rutger H.J., Ben Hadj, Saima, Jahanifar, Mostafa, Shephard, Adam, Dexl, Jakob, Wittenberg, Thomas, Kondo, Satoshi, Lafarge, Maxime W., Koelzer, Viktor H., Liang, Jingtang, Wang, Yubo, Long, Xi, Liu, Jingxin, Razavi, Salar, Khademi, April, Yang, Sen, Wang, Xiyue, Erber, Ramona, Klang, Andrea, Lipnik, Karoline, Bolfa, Pompei, Dark, Michael J., Wasinger, Gabriel, Veta, Mitko, Breininger, Katharina
Published in Medical image analysis (01.02.2023)
Published in Medical image analysis (01.02.2023)
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Journal Article
Automated diagnosis of 7 canine skin tumors using machine learning on H&E-stained whole slide images
Fragoso-Garcia, Marco, Wilm, Frauke, Bertram, Christof A., Merz, Sophie, Schmidt, Anja, Donovan, Taryn, Fuchs-Baumgartinger, Andrea, Bartel, Alexander, Marzahl, Christian, Diehl, Laura, Puget, Chloe, Maier, Andreas, Aubreville, Marc, Breininger, Katharina, Klopfleisch, Robert
Published in Veterinary pathology (01.11.2023)
Published in Veterinary pathology (01.11.2023)
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Journal Article
Information mismatch in PHH3-assisted mitosis annotation leads to interpretation shifts in H&E slide analysis
Ganz, Jonathan, Marzahl, Christian, Ammeling, Jonas, Rosbach, Emely, Richter, Barbara, Puget, Chloé, Denk, Daniela, Demeter, Elena A., Tăbăran, Flaviu A., Wasinger, Gabriel, Lipnik, Karoline, Tecilla, Marco, Valentine, Matthew J., Dark, Michael J., Abele, Niklas, Bolfa, Pompei, Erber, Ramona, Klopfleisch, Robert, Merz, Sophie, Donovan, Taryn A., Jabari, Samir, Bertram, Christof A., Breininger, Katharina, Aubreville, Marc
Published in Scientific reports (01.11.2024)
Published in Scientific reports (01.11.2024)
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Journal Article
Cytologic scoring of equine exercise-induced pulmonary hemorrhage: Performance of human experts and a deep learning-based algorithm
Bertram, Christof A., Marzahl, Christian, Bartel, Alexander, Stayt, Jason, Bonsembiante, Federico, Beeler-Marfisi, Janet, Barton, Ann K., Brocca, Ginevra, Gelain, Maria E., Gläsel, Agnes, Preez, Kelly du, Weiler, Kristina, Weissenbacher-Lang, Christiane, Breininger, Katharina, Aubreville, Marc, Maier, Andreas, Klopfleisch, Robert, Hill, Jenny
Published in Veterinary pathology (01.01.2023)
Published in Veterinary pathology (01.01.2023)
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Journal Article
Computer-assisted mitotic count using a deep learning–based algorithm improves interobserver reproducibility and accuracy
Bertram, Christof A., Aubreville, Marc, Donovan, Taryn A., Bartel, Alexander, Wilm, Frauke, Marzahl, Christian, Assenmacher, Charles-Antoine, Becker, Kathrin, Bennett, Mark, Corner, Sarah, Cossic, Brieuc, Denk, Daniela, Dettwiler, Martina, Gonzalez, Beatriz Garcia, Gurtner, Corinne, Haverkamp, Ann-Kathrin, Heier, Annabelle, Lehmbecker, Annika, Merz, Sophie, Noland, Erica L., Plog, Stephanie, Schmidt, Anja, Sebastian, Franziska, Sledge, Dodd G., Smedley, Rebecca C., Tecilla, Marco, Thaiwong, Tuddow, Fuchs-Baumgartinger, Andrea, Meuten, Donald J., Breininger, Katharina, Kiupel, Matti, Maier, Andreas, Klopfleisch, Robert
Published in Veterinary pathology (01.03.2022)
Published in Veterinary pathology (01.03.2022)
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Journal Article
The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue
Weitz, Philippe, Valkonen, Masi, Solorzano, Leslie, Carr, Circe, Kartasalo, Kimmo, Boissin, Constance, Koivukoski, Sonja, Kuusela, Aino, Rasic, Dusan, Feng, Yanbo, Pouplier, Sandra Sinius, Sharma, Abhinav, Eriksson, Kajsa Ledesma, Robertson, Stephanie, Marzahl, Christian, Gatenbee, Chandler D., Anderson, Alexander R.A., Wodzinski, Marek, Jurgas, Artur, Marini, Niccolò, Atzori, Manfredo, Müller, Henning, Budelmann, Daniel, Weiss, Nick, Heldmann, Stefan, Lotz, Johannes, Wolterink, Jelmer M., De Santi, Bruno, Patil, Abhijeet, Sethi, Amit, Kondo, Satoshi, Kasai, Satoshi, Hirasawa, Kousuke, Farrokh, Mahtab, Kumar, Neeraj, Greiner, Russell, Latonen, Leena, Laenkholm, Anne-Vibeke, Hartman, Johan, Ruusuvuori, Pekka, Rantalainen, Mattias
Published in Medical image analysis (01.10.2024)
Published in Medical image analysis (01.10.2024)
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Journal Article
Domain Adversarial RetinaNet as a Reference Algorithm for the MItosis DOmain Generalization Challenge
Wilm, Frauke, Marzahl, Christian, Breininger, Katharina, Aubreville, Marc
Published in Biomedical Image Registration, Domain Generalisation and Out-Of-Distribution Analysis (2022)
Published in Biomedical Image Registration, Domain Generalisation and Out-Of-Distribution Analysis (2022)
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Book Chapter
Information mismatch in PHH3-assisted mitosis annotation leads to interpretation shifts in H E slide analysis
Jonathan Ganz, Christian Marzahl, Jonas Ammeling, Emely Rosbach, Barbara Richter, Chloé Puget, Daniela Denk, Elena A. Demeter, Flaviu A. Tăbăran, Gabriel Wasinger, Karoline Lipnik, Marco Tecilla, Matthew J. Valentine, Michael J. Dark, Niklas Abele, Pompei Bolfa, Ramona Erber, Robert Klopfleisch, Sophie Merz, Taryn A. Donovan, Samir Jabari, Christof A. Bertram, Katharina Breininger, Marc Aubreville
Published in Scientific reports (01.11.2024)
Published in Scientific reports (01.11.2024)
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Journal Article
Domain Adversarial RetinaNet as a Reference Algorithm for the MItosis DOmain Generalization Challenge
Wilm, Frauke, Marzahl, Christian, Breininger, Katharina, Aubreville, Marc
Published in arXiv.org (15.03.2022)
Published in arXiv.org (15.03.2022)
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Paper
Journal Article
Image processing method for displaying cells of a plurality of overall images
Kroeger, Christine, Voigt, Joern, Gerlach, Stefan, Marzahl, Christian
Year of Publication 26.12.2023
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Year of Publication 26.12.2023
Patent
Iterative Cross-Scanner Registration for Whole Slide Images
Theelke, Luisa, Wilm, Frauke, Marzahl, Christian, Bertram, Christof A., Klopfleisch, Robert, Maier, Andreas, Aubreville, Marc, Breininger, Katharina
Published in 2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW) (01.10.2021)
Published in 2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW) (01.10.2021)
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Conference Proceeding