MTF2 recruits Polycomb Repressive Complex 2 by helical-shape-selective DNA binding
Perino, Matteo, van Mierlo, Guido, Karemaker, Ino D., van Genesen, Siebe, Vermeulen, Michiel, Marks, Hendrik, van Heeringen, Simon J., Veenstra, Gert Jan C.
Published in Nature genetics (01.07.2018)
Published in Nature genetics (01.07.2018)
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Journal Article
Tracking the embryonic stem cell transition from ground state pluripotency
Kalkan, Tüzer, Olova, Nelly, Roode, Mila, Mulas, Carla, Lee, Heather J, Nett, Isabelle, Marks, Hendrik, Walker, Rachael, Stunnenberg, Hendrik G, Lilley, Kathryn S, Nichols, Jennifer, Reik, Wolf, Bertone, Paul, Smith, Austin
Published in Development (Cambridge) (01.04.2017)
Published in Development (Cambridge) (01.04.2017)
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Journal Article
The Transcriptional and Epigenomic Foundations of Ground State Pluripotency
Marks, Hendrik, Kalkan, Tüzer, Menafra, Roberta, Denissov, Sergey, Jones, Kenneth, Hofemeister, Helmut, Nichols, Jennifer, Kranz, Andrea, Francis Stewart, A., Smith, Austin, Stunnenberg, Hendrik G.
Published in Cell (27.04.2012)
Published in Cell (27.04.2012)
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Journal Article
STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells
Peng, Tianran, Zhai, Yanan, Atlasi, Yaser, Ter Huurne, Menno, Marks, Hendrik, Stunnenberg, Hendrik G, Megchelenbrink, Wout
Published in Genome Biology (10.09.2020)
Published in Genome Biology (10.09.2020)
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Journal Article
Mll2 is required for H3K4 trimethylation on bivalent promoters in embryonic stem cells, whereas Mll1 is redundant
Denissov, Sergei, Hofemeister, Helmut, Marks, Hendrik, Kranz, Andrea, Ciotta, Giovanni, Singh, Sukhdeep, Anastassiadis, Konstantinos, Stunnenberg, Hendrik G, Stewart, A Francis
Published in Development (Cambridge) (01.02.2014)
Published in Development (Cambridge) (01.02.2014)
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Journal Article
Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk
Brinkman, Arie B, Gu, Hongcang, Bartels, Stefanie J J, Zhang, Yingying, Matarese, Filomena, Simmer, Femke, Marks, Hendrik, Bock, Christoph, Gnirke, Andreas, Meissner, Alexander, Stunnenberg, Hendrik G
Published in Genome research (01.06.2012)
Published in Genome research (01.06.2012)
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Journal Article
Whole-Genome Bisulfite Sequencing of Two Distinct Interconvertible DNA Methylomes of Mouse Embryonic Stem Cells
Habibi, Ehsan, Brinkman, Arie B., Arand, Julia, Kroeze, Leonie I., Kerstens, Hindrik H.D., Matarese, Filomena, Lepikhov, Konstantin, Gut, Marta, Brun-Heath, Isabelle, Hubner, Nina C., Benedetti, Rosaria, Altucci, Lucia, Jansen, Joop H., Walter, Jörn, Gut, Ivo G., Marks, Hendrik, Stunnenberg, Hendrik G.
Published in Cell stem cell (05.09.2013)
Published in Cell stem cell (05.09.2013)
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Journal Article
Integrative Proteomic Profiling Reveals PRC2-Dependent Epigenetic Crosstalk Maintains Ground-State Pluripotency
van Mierlo, Guido, Dirks, René A.M., De Clerck, Laura, Brinkman, Arie B., Huth, Michelle, Kloet, Susan L., Saksouk, Nehmé, Kroeze, Leonie I., Willems, Sander, Farlik, Matthias, Bock, Christoph, Jansen, Joop H., Deforce, Dieter, Vermeulen, Michiel, Déjardin, Jérôme, Dhaenens, Maarten, Marks, Hendrik
Published in Cell stem cell (03.01.2019)
Published in Cell stem cell (03.01.2019)
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Journal Article
In vitro capture and characterization of embryonic rosette-stage pluripotency between naive and primed states
Neagu, Alex, van Genderen, Emiel, Escudero, Irene, Verwegen, Lucas, Kurek, Dorota, Lehmann, Johannes, Stel, Jente, Dirks, René A. M., van Mierlo, Guido, Maas, Alex, Eleveld, Cindy, Ge, Yang, den Dekker, Alexander. T., Brouwer, Rutger W. W., van IJcken, Wilfred F. J., Modic, Miha, Drukker, Micha, Jansen, Joop H., Rivron, Nicolas C., Baart, Esther B., Marks, Hendrik, ten Berge, Derk
Published in Nature cell biology (01.05.2020)
Published in Nature cell biology (01.05.2020)
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Journal Article
Miniaturised interaction proteomics on a microfluidic platform with ultra-low input requirements
Furlan, Cristina, Dirks, René A. M., Thomas, Peter C., Jones, Robert C., Wang, Jing, Lynch, Mark, Marks, Hendrik, Vermeulen, Michiel
Published in Nature communications (04.04.2019)
Published in Nature communications (04.04.2019)
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Journal Article
Human branching cholangiocyte organoids recapitulate functional bile duct formation
Roos, Floris J.M., van Tienderen, Gilles S., Wu, Haoyu, Bordeu, Ignacio, Vinke, Dina, Albarinos, Laura Muñoz, Monfils, Kathryn, Niesten, Sabrah, Smits, Ron, Willemse, Jorke, Rosmark, Oskar, Westergren-Thorsson, Gunilla, Kunz, Daniel J., de Wit, Maurice, French, Pim J., Vallier, Ludovic, IJzermans, Jan N.M., Bartfai, Richard, Marks, Hendrik, Simons, Ben D., van Royen, Martin E., Verstegen, Monique M.A., van der Laan, Luc J.W.
Published in Cell stem cell (05.05.2022)
Published in Cell stem cell (05.05.2022)
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Journal Article
Otx2 and Oct4 Drive Early Enhancer Activation during Embryonic Stem Cell Transition from Naive Pluripotency
Yang, Shen-Hsi, Kalkan, Tüzer, Morissroe, Claire, Marks, Hendrik, Stunnenberg, Hendrik, Smith, Austin, Sharrocks, Andrew D.
Published in Cell reports (Cambridge) (26.06.2014)
Published in Cell reports (Cambridge) (26.06.2014)
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Journal Article
H3K27me3 at pericentromeric heterochromatin is a defining feature of the early mouse blastocyst
Pailles, Mélanie, Hirlemann, Mélanie, Brochard, Vincent, Chebrout, Martine, Oudin, Jean-François, Marks, Hendrik, Jouneau, Alice, Bonnet-Garnier, Amélie
Published in Scientific reports (16.08.2022)
Published in Scientific reports (16.08.2022)
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Journal Article
Dynamics of gene silencing during X inactivation using allele-specific RNA-seq
Marks, Hendrik, Kerstens, Hindrik H D, Barakat, Tahsin Stefan, Splinter, Erik, Dirks, René A M, van Mierlo, Guido, Joshi, Onkar, Wang, Shuang-Yin, Babak, Tomas, Albers, Cornelis A, Kalkan, Tüzer, Smith, Austin, Jouneau, Alice, de Laat, Wouter, Gribnau, Joost, Stunnenberg, Hendrik G
Published in Genome Biology (03.08.2015)
Published in Genome Biology (03.08.2015)
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Journal Article
Dynamic CpG methylation delineates subregions within super-enhancers selectively decommissioned at the exit from naive pluripotency
Bell, Emma, Curry, Edward W., Megchelenbrink, Wout, Jouneau, Luc, Brochard, Vincent, Tomaz, Rute A., Mau, King Hang T., Atlasi, Yaser, de Souza, Roshni A., Marks, Hendrik, Stunnenberg, Hendrik G., Jouneau, Alice, Azuara, Véronique
Published in Nature communications (28.02.2020)
Published in Nature communications (28.02.2020)
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Journal Article
Critical Role for P53 in Regulating the Cell Cycle of Ground State Embryonic Stem Cells
ter Huurne, Menno, Peng, Tianran, Yi, Guoqiang, van Mierlo, Guido, Marks, Hendrik, Stunnenberg, Hendrik G.
Published in Stem cell reports (11.02.2020)
Published in Stem cell reports (11.02.2020)
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Journal Article
Epigenetic regulation of learning and memory by Drosophila EHMT/G9a
Kramer, Jamie M, Kochinke, Korinna, Oortveld, Merel A W, Marks, Hendrik, Kramer, Daniela, de Jong, Eiko K, Asztalos, Zoltan, Westwood, J Timothy, Stunnenberg, Hendrik G, Sokolowski, Marla B, Keleman, Krystyna, Zhou, Huiqing, van Bokhoven, Hans, Schenck, Annette
Published in PLoS biology (01.01.2011)
Published in PLoS biology (01.01.2011)
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An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs
Huang, Ru, Jaritz, Markus, Guenzl, Philipp, Vlatkovic, Irena, Sommer, Andreas, Tamir, Ido M, Marks, Hendrik, Klampfl, Thorsten, Kralovics, Robert, Stunnenberg, Hendrik G, Barlow, Denise P, Pauler, Florian M
Published in PloS one (10.11.2011)
Published in PloS one (10.11.2011)
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Journal Article
An efficient method for generation of bi-allelic null mutant mouse embryonic stem cells and its application for investigating epigenetic modifiers
Fisher, Cynthia L, Marks, Hendrik, Cho, Lily Ting-Yin, Andrews, Robert, Wormald, Sam, Carroll, Thomas, Iyer, Vivek, Tate, Peri, Rosen, Barry, Stunnenberg, Hendrik G, Fisher, Amanda G, Skarnes, William C
Published in Nucleic acids research (01.12.2017)
Published in Nucleic acids research (01.12.2017)
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