Transcription start site choice diversifies mRNA isoforms and defines cancer cell behavior
Published in Nature structural & molecular biology
(01.12.2023)
Get full text
Journal Article
Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants
Pasquali, Lorenzo, Gaulton, Kyle J, Rodríguez-Seguí, Santiago A, Mularoni, Loris, Miguel-Escalada, Irene, Akerman, İldem, Tena, Juan J, Morán, Ignasi, Gómez-Marín, Carlos, van de Bunt, Martijn, Ponsa-Cobas, Joan, Castro, Natalia, Nammo, Takao, Cebola, Inês, García-Hurtado, Javier, Maestro, Miguel Angel, Pattou, François, Piemonti, Lorenzo, Berney, Thierry, Gloyn, Anna L, Ravassard, Philippe, Skarmeta, José Luis Gómez, Müller, Ferenc, McCarthy, Mark I, Ferrer, Jorge
Published in Nature genetics (01.02.2014)
Published in Nature genetics (01.02.2014)
Get full text
Journal Article
Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing
Nepal, Chirag, Hadzhiev, Yavor, Balwierz, Piotr, Tarifeño-Saldivia, Estefanía, Cardenas, Ryan, Wragg, Joseph W., Suzuki, Ana-Maria, Carninci, Piero, Peers, Bernard, Lenhard, Boris, Andersen, Jesper B., Müller, Ferenc
Published in Nature communications (10.01.2020)
Published in Nature communications (10.01.2020)
Get full text
Journal Article
Web Resource
Two independent transcription initiation codes overlap on vertebrate core promoters
Haberle, Vanja, Li, Nan, Hadzhiev, Yavor, Plessy, Charles, Previti, Christopher, Nepal, Chirag, Gehrig, Jochen, Dong, Xianjun, Akalin, Altuna, Suzuki, Ana Maria, van IJcken, Wilfred F. J., Armant, Olivier, Ferg, Marco, Strähle, Uwe, Carninci, Piero, Müller, Ferenc, Lenhard, Boris
Published in Nature (London) (20.03.2014)
Published in Nature (London) (20.03.2014)
Get full text
Journal Article
A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates
Shen, Dan, Song, Chengyi, Miskey, Csaba, Chan, Shuheng, Guan, Zhongxia, Sang, Yatong, Wang, Yali, Chen, Cai, Wang, Xiaoyan, Müller, Ferenc, Ivics, Zoltán, Gao, Bo
Published in Nucleic acids research (26.02.2021)
Published in Nucleic acids research (26.02.2021)
Get full text
Journal Article
TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage
Yu, Changwei, Cvetesic, Nevena, Hisler, Vincent, Gupta, Kapil, Ye, Tao, Gazdag, Emese, Negroni, Luc, Hajkova, Petra, Berger, Imre, Lenhard, Boris, Müller, Ferenc, Vincent, Stéphane D., Tora, László
Published in Nature communications (22.12.2020)
Published in Nature communications (22.12.2020)
Get full text
Journal Article
Zebrafish regulatory genomic resources for disease modelling and regeneration
Jimenez Gonzalez, Ada, Baranasic, Damir, Müller, Ferenc
Published in Disease models & mechanisms (01.08.2023)
Published in Disease models & mechanisms (01.08.2023)
Get full text
Journal Article
Germline mutations in DIS3L2 cause the Perlman syndrome of overgrowth and Wilms tumor susceptibility
Astuti, Dewi, Morris, Mark R, Cooper, Wendy N, Staals, Raymond H J, Wake, Naomi C, Fews, Graham A, Gill, Harmeet, Gentle, Dean, Shuib, Salwati, Ricketts, Christopher J, Cole, Trevor, van Essen, Anthonie J, van Lingen, Richard A, Neri, Giovanni, Opitz, John M, Rump, Patrick, Stolte-Dijkstra, Irene, Müller, Ferenc, Pruijn, Ger J M, Latif, Farida, Maher, Eamonn R
Published in Nature genetics (01.03.2012)
Published in Nature genetics (01.03.2012)
Get full text
Journal Article
CMTr mediated 2′- O -ribose methylation status of cap-adjacent nucleotides across animals
Dix, Thomas C., Haussmann, Irmgard U., Brivio, Sarah, Nallasivan, Mohannakarthik P., HadzHiev, Yavor, Müller, Ferenc, Müller, Berndt, Pettitt, Jonathan, Soller, Matthias
Published in RNA (Cambridge) (01.10.2022)
Published in RNA (Cambridge) (01.10.2022)
Get full text
Journal Article
A cell cycle-coordinated Polymerase II transcription compartment encompasses gene expression before global genome activation
Hadzhiev, Yavor, Qureshi, Haseeb K., Wheatley, Lucy, Cooper, Ledean, Jasiulewicz, Aleksandra, Van Nguyen, Huy, Wragg, Joseph W., Poovathumkadavil, Divyasree, Conic, Sascha, Bajan, Sarah, Sik, Attila, Hutvàgner, György, Tora, Làszlò, Gambus, Agnieszka, Fossey, John S., Müller, Ferenc
Published in Nature communications (11.02.2019)
Published in Nature communications (11.02.2019)
Get full text
Journal Article
RNA polymerase II transcription initiation in holo-TFIID-depleted mouse embryonic stem cells
Hisler, Vincent, Bardot, Paul, Detilleux, Dylane, Bernardini, Andrea, Stierle, Matthieu, Sanchez, Emmanuel Garcia, Richard, Claire, Arab, Lynda Hadj, Ehrhard, Cynthia, Morlet, Bastien, Hadzhiev, Yavor, Jung, Matthieu, Le Gras, Stéphanie, Négroni, Luc, Müller, Ferenc, Tora, László, Vincent, Stéphane D.
Published in Cell reports (Cambridge) (22.10.2024)
Published in Cell reports (Cambridge) (22.10.2024)
Get full text
Journal Article
Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs
Nepal, Chirag, Coolen, Marion, Hadzhiev, Yavor, Cussigh, Delphine, Mydel, Piotr, Steen, Vidar M, Carninci, Piero, Andersen, Jesper B, Bally-Cuif, Laure, Müller, Ferenc, Lenhard, Boris
Published in Nucleic acids research (20.04.2016)
Published in Nucleic acids research (20.04.2016)
Get full text
Journal Article
Ferredoxin 1b (Fdx1b) Is the Essential Mitochondrial Redox Partner for Cortisol Biosynthesis in Zebrafish
Griffin, Aliesha, Parajes, Silvia, Weger, Meltem, Zaucker, Andreas, Taylor, Angela E, O'Neil, Donna M, Müller, Ferenc, Krone, Nils
Published in Endocrinology (Philadelphia) (01.03.2016)
Published in Endocrinology (Philadelphia) (01.03.2016)
Get full text
Journal Article
Transcriptional profiling reveals barcode-like toxicogenomic responses in the zebrafish embryo
Yang, Lixin, Kemadjou, Jules R, Zinsmeister, Christian, Bauer, Matthias, Legradi, Jessica, Müller, Ferenc, Pankratz, Michael, Jäkel, Jens, Strähle, Uwe
Published in Genome biology (25.10.2007)
Published in Genome biology (25.10.2007)
Get full text
Journal Article
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis
Nepal, Chirag, Hadzhiev, Yavor, Previti, Christopher, Haberle, Vanja, Li, Nan, Takahashi, Hazuki, Suzuki, Ana Maria M, Sheng, Ying, Abdelhamid, Rehab F, Anand, Santosh, Gehrig, Jochen, Akalin, Altuna, Kockx, Christel E M, van der Sloot, Antoine A J, van Ijcken, Wilfred F J, Armant, Olivier, Rastegar, Sepand, Watson, Craig, Strähle, Uwe, Stupka, Elia, Carninci, Piero, Lenhard, Boris, Müller, Ferenc
Published in Genome research (01.11.2013)
Published in Genome research (01.11.2013)
Get full text
Journal Article
Prepatterning of Developmental Gene Expression by Modified Histones before Zygotic Genome Activation
Lindeman, Leif C., Andersen, Ingrid S., Reiner, Andrew H., Li, Nan, Aanes, Håvard, Østrup, Olga, Winata, Cecilia, Mathavan, Sinnakaruppan, Müller, Ferenc, Aleström, Peter, Collas, Philippe
Published in Developmental cell (13.12.2011)
Published in Developmental cell (13.12.2011)
Get full text
Journal Article
Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos
Liebel, Urban, Müller, Ferenc, Gehrig, Jochen, Reischl, Markus, Kalmár, Éva, Ferg, Marco, Hadzhiev, Yavor, Zaucker, Andreas, Song, Chengyi, Schindler, Simone
Published in Nature methods (01.12.2009)
Published in Nature methods (01.12.2009)
Get full text
Journal Article
Redefining the Initiation and Maintenance of Zebrafish Interrenal Steroidogenesis by Characterizing the Key Enzyme Cyp11a2
Parajes, Silvia, Griffin, Aliesha, Taylor, Angela E, Rose, Ian T, Miguel-Escalada, Irene, Hadzhiev, Yavor, Arlt, Wiebke, Shackleton, Cedric, Müller, Ferenc, Krone, Nils
Published in Endocrinology (Philadelphia) (01.08.2013)
Published in Endocrinology (Philadelphia) (01.08.2013)
Get full text
Journal Article