MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis
Vallenet, David, Calteau, Alexandra, Dubois, Mathieu, Amours, Paul, Bazin, Adelme, Beuvin, Mylène, Burlot, Laura, Bussell, Xavier, Fouteau, Stéphanie, Gautreau, Guillaume, Lajus, Aurélie, Langlois, Jordan, Planel, Rémi, Roche, David, Rollin, Johan, Rouy, Zoe, Sabatet, Valentin, Médigue, Claudine
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes
Vallenet, David, Calteau, Alexandra, Cruveiller, Stéphane, Gachet, Mathieu, Lajus, Aurélie, Josso, Adrien, Mercier, Jonathan, Renaux, Alexandre, Rollin, Johan, Rouy, Zoe, Roche, David, Scarpelli, Claude, Médigue, Claudine
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Gautreau, Guillaume, Bazin, Adelme, Gachet, Mathieu, Planel, Rémi, Burlot, Laura, Dubois, Mathieu, Perrin, Amandine, Médigue, Claudine, Calteau, Alexandra, Cruveiller, Stéphane, Matias, Catherine, Ambroise, Christophe, Rocha, Eduardo P C, Vallenet, David
Published in PLoS computational biology (19.03.2020)
Published in PLoS computational biology (19.03.2020)
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Journal Article
Tempo and mode of genome evolution in a 50,000-generation experiment
Tenaillon, Olivier, Barrick, Jeffrey E., Ribeck, Noah, Deatherage, Daniel E., Blanchard, Jeffrey L., Dasgupta, Aurko, Wu, Gabriel C., Wielgoss, Sébastien, Cruveiller, Stéphane, Médigue, Claudine, Schneider, Dominique, Lenski, Richard E.
Published in Nature (London) (11.08.2016)
Published in Nature (London) (11.08.2016)
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Journal Article
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
Vallenet, David, Belda, Eugeni, Calteau, Alexandra, Cruveiller, Stéphane, Engelen, Stefan, Lajus, Aurélie, Le Fèvre, François, Longin, Cyrille, Mornico, Damien, Roche, David, Rouy, Zoé, Salvignol, Gregory, Scarpelli, Claude, Thil Smith, Adam Alexander, Weiman, Marion, Médigue, Claudine
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments
Janssen, Paul J, Van Houdt, Rob, Moors, Hugo, Monsieurs, Pieter, Morin, Nicolas, Michaux, Arlette, Benotmane, Mohammed A, Leys, Natalie, Vallaeys, Tatiana, Lapidus, Alla, Monchy, Sébastien, Médigue, Claudine, Taghavi, Safiyh, McCorkle, Sean, Dunn, John, van der Lelie, Daniël, Mergeay, Max
Published in PloS one (05.05.2010)
Published in PloS one (05.05.2010)
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“Candidatus Cloacamonas Acidaminovorans”: Genome Sequence Reconstruction Provides a First Glimpse of a New Bacterial Division
PELLETIER, Eric, KREIMEYER, Annett, COHEN, Georges N, MEDIGUE, Claudine, WEISSENBACH, Jean, LE PASLIER, Denis, BOCS, Stéphanie, ROUY, Zoé, GYAPAY, Gabor, CHOUARI, Rakia, RIVIDRE, Delphine, GANESAN, Akila, DAEGELEN, Patrick, SGHIR, Abdelghani
Published in Journal of Bacteriology (01.04.2008)
Published in Journal of Bacteriology (01.04.2008)
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Journal Article
A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa
Humbert, Jean-François, Barbe, Valérie, Latifi, Amel, Gugger, Muriel, Calteau, Alexandra, Coursin, Therese, Lajus, Aurélie, Castelli, Vanina, Oztas, Sophie, Samson, Gaëlle, Longin, Cyrille, Medigue, Claudine, de Marsac, Nicole Tandeau
Published in PloS one (12.08.2013)
Published in PloS one (12.08.2013)
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Journal Article
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later
Barbe, Valerie, Cruveiller, Stephane, Kunst, Frank, Lenoble, Patricia, Meurice, Guillaume, Sekowska, Agnieszka, Vallenet, David, Wang, Tingzhang, Moszer, Ivan, Medigue, Claudine, Danchin, Antoine
Published in Microbiology (Society for General Microbiology) (01.06.2009)
Published in Microbiology (Society for General Microbiology) (01.06.2009)
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Journal Article
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
Belda, Eugeni, van Heck, Ruben G. A., José Lopez-Sanchez, Maria, Cruveiller, Stéphane, Barbe, Valérie, Fraser, Claire, Klenk, Hans-Peter, Petersen, Jörn, Morgat, Anne, Nikel, Pablo I., Vallenet, David, Rouy, Zoé, Sekowska, Agnieszka, Martins dos Santos, Vitor A. P., de Lorenzo, Víctor, Danchin, Antoine, Médigue, Claudine
Published in Environmental microbiology (01.10.2016)
Published in Environmental microbiology (01.10.2016)
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Journal Article
Plasmid of Escherichia coli Strain S88 (O45:K1:H7) That Causes Neonatal Meningitis Is Closely Related to Avian Pathogenic E. coli Plasmids and Is Associated with High-Level Bacteremia in a Neonatal Rat Meningitis Model
Peigne, Chantal, Bidet, Philippe, Mahjoub-Messai, Farah, Plainvert, Céline, Barbe, Valérie, Médigue, Claudine, Frapy, Eric, Nassif, Xavier, Denamur, Erick, Bingen, Edouard, Bonacorsi, Stéphane
Published in Infection and Immunity (01.06.2009)
Published in Infection and Immunity (01.06.2009)
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Journal Article
Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes
Gomez-Valero, Laura, Rusniok, Christophe, Jarraud, Sophie, Vacherie, Benoit, Rouy, Zoé, Barbe, Valerie, Medigue, Claudine, Etienne, Jerome, Buchrieser, Carmen
Published in BMC genomics (01.11.2011)
Published in BMC genomics (01.11.2011)
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Journal Article
Comparative analysis of Acinetobacters: three genomes for three lifestyles
Vallenet, David, Nordmann, Patrice, Barbe, Valérie, Poirel, Laurent, Mangenot, Sophie, Bataille, Elodie, Dossat, Carole, Gas, Shahinaz, Kreimeyer, Annett, Lenoble, Patricia, Oztas, Sophie, Poulain, Julie, Segurens, Béatrice, Robert, Catherine, Abergel, Chantal, Claverie, Jean-Michel, Raoult, Didier, Médigue, Claudine, Weissenbach, Jean, Cruveiller, Stéphane
Published in PloS one (19.03.2008)
Published in PloS one (19.03.2008)
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Journal Article
Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style?
Trujillo, Martha E, Bacigalupe, Rodrigo, Pujic, Petar, Igarashi, Yasuhiro, Benito, Patricia, Riesco, Raúl, Médigue, Claudine, Normand, Philippe
Published in PloS one (30.09.2014)
Published in PloS one (30.09.2014)
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Journal Article
Experimental evolution of a plant pathogen into a legume symbiont
Marchetti, Marta, Capela, Delphine, Glew, Michelle, Cruveiller, Stéphane, Chane-Woon-Ming, Béatrice, Gris, Carine, Timmers, Ton, Poinsot, Véréna, Gilbert, Luz B, Heeb, Philipp, Médigue, Claudine, Batut, Jacques, Masson-Boivin, Catherine
Published in PLoS biology (01.01.2010)
Published in PLoS biology (01.01.2010)
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Journal Article
Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli
Raeside, Colin, Gaffé, Joël, Deatherage, Daniel E, Tenaillon, Olivier, Briska, Adam M, Ptashkin, Ryan N, Cruveiller, Stéphane, Médigue, Claudine, Lenski, Richard E, Barrick, Jeffrey E, Schneider, Dominique
Published in mBio (09.09.2014)
Published in mBio (09.09.2014)
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Journal Article
Characterization of a P1-like bacteriophage carrying an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain
Billard-Pomares, Typhaine, Fouteau, Stéphanie, Jacquet, Marie Elise, Roche, David, Barbe, Valérie, Castellanos, Miguel, Bouet, Jean Yves, Cruveiller, Stéphane, Médigue, Claudine, Blanco, Jorge, Clermont, Olivier, Denamur, Erick, Branger, Catherine
Published in Antimicrobial agents and chemotherapy (01.11.2014)
Published in Antimicrobial agents and chemotherapy (01.11.2014)
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Journal Article
MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data
Médigue, Claudine, Calteau, Alexandra, Cruveiller, Stéphane, Gachet, Mathieu, Gautreau, Guillaume, Josso, Adrien, Lajus, Aurélie, Langlois, Jordan, Pereira, Hugo, Planel, Rémi, Roche, David, Rollin, Johan, Rouy, Zoe, Vallenet, David
Published in Briefings in bioinformatics (19.07.2019)
Published in Briefings in bioinformatics (19.07.2019)
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Journal Article
Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82
Miquel, Sylvie, Peyretaillade, Eric, Claret, Laurent, de Vallée, Amélie, Dossat, Carole, Vacherie, Benoit, Zineb, El Hajji, Segurens, Beatrice, Barbe, Valerie, Sauvanet, Pierre, Neut, Christel, Colombel, Jean-Frédéric, Medigue, Claudine, Mojica, Francisco J M, Peyret, Pierre, Bonnet, Richard, Darfeuille-Michaud, Arlette
Published in PloS one (17.09.2010)
Published in PloS one (17.09.2010)
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Journal Article
Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease
Gomez-Valero, Laura, Rusniok, Christophe, Rolando, Monica, Neou, Mario, Dervins-Ravault, Delphine, Demirtas, Jasmin, Rouy, Zoe, Moore, Robert J, Chen, Honglei, Petty, Nicola K, Jarraud, Sophie, Etienne, Jerome, Steinert, Michael, Heuner, Klaus, Gribaldo, Simonetta, Médigue, Claudine, Glöckner, Gernot, Hartland, Elizabeth L, Buchrieser, Carmen
Published in Genome Biology (03.11.2014)
Published in Genome Biology (03.11.2014)
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