Architecture of the synaptotagmin-SNARE machinery for neuronal exocytosis
Zhou, Qiangjun, Lai, Ying, Bacaj, Taulant, Zhao, Minglei, Lyubimov, Artem Y, Uervirojnangkoorn, Monarin, Zeldin, Oliver B, Brewster, Aaron S, Sauter, Nicholas K, Cohen, Aina E, Soltis, S Michael, Alonso-Mori, Roberto, Chollet, Matthieu, Lemke, Henrik T, Pfuetzner, Richard A, Choi, Ucheor B, Weis, William I, Diao, Jiajie, Südhof, Thomas C, Brunger, Axel T
Published in Nature (London) (03.09.2015)
Published in Nature (London) (03.09.2015)
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Journal Article
Structural characterization of a highly-potent V3-glycan broadly neutralizing antibody bound to natively-glycosylated HIV-1 envelope
Barnes, Christopher O, Gristick, Harry B, Freund, Natalia T, Escolano, Amelia, Lyubimov, Artem Y, Hartweger, Harald, West, Jr, Anthony P, Cohen, Aina E, Nussenzweig, Michel C, Bjorkman, Pamela J
Published in Nature communications (28.03.2018)
Published in Nature communications (28.03.2018)
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Journal Article
The nuts and bolts of ring-translocase structure and mechanism
Lyubimov, Artem Y, Strycharska, Melania, Berger, James M
Published in Current opinion in structural biology (01.04.2011)
Published in Current opinion in structural biology (01.04.2011)
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Journal Article
Nucleotide and Partner-Protein Control of Bacterial Replicative Helicase Structure and Function
Strycharska, Melania S., Arias-Palomo, Ernesto, Lyubimov, Artem Y., Erzberger, Jan P., O’Shea, Valerie L., Bustamante, Carlos J., Berger, James M.
Published in Molecular cell (26.12.2013)
Published in Molecular cell (26.12.2013)
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Journal Article
Tuning Catalytic Bias of Hydrogen Gas Producing Hydrogenases
Artz, Jacob H, Zadvornyy, Oleg A, Mulder, David W, Keable, Stephen M, Cohen, Aina E, Ratzloff, Michael W, Williams, S. Garrett, Ginovska, Bojana, Kumar, Neeraj, Song, Jinhu, McPhillips, Scott E, Davidson, Catherine M, Lyubimov, Artem Y, Pence, Natasha, Schut, Gerrit J, Jones, Anne K, Soltis, S. Michael, Adams, Michael W. W, Raugei, Simone, King, Paul W, Peters, John W
Published in Journal of the American Chemical Society (22.01.2020)
Published in Journal of the American Chemical Society (22.01.2020)
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Journal Article
Goniometer-based femtosecond crystallography with X-ray free electron lasers
Cohen, Aina E., Soltis, S. Michael, González, Ana, Aguila, Laura, Alonso-Mori, Roberto, Barnes, Christopher O., Baxter, Elizabeth L., Brehmer, Winnie, Brewster, Aaron S., Brunger, Axel T., Calero, Guillermo, Chang, Joseph F., Chollet, Matthieu, Ehrensberger, Paul, Eriksson, Thomas L., Feng, Yiping, Hattne, Johan, Hedman, Britt, Hollenbeck, Michael, Holton, James M., Keable, Stephen, Kobilka, Brian K., Kovaleva, Elena G., Kruse, Andrew C., Lemke, Henrik T., Lin, Guowu, Lyubimov, Artem Y., Manglik, Aashish, Mathews, Irimpan I., McPhillips, Scott E., Nelson, Silke, Peters, John W., Sauter, Nicholas K., Smith, Clyde A., Song, Jinhu, Stevenson, Hilary P., Tsai, Yingssu, Uervirojnangkoorn, Monarin, Vinetsky, Vladimir, Wakatsuki, Soichi, Weis, William I., Zadvornyy, Oleg A., Zeldin, Oliver B., Zhu, Diling, Hodgson, Keith O.
Published in Proceedings of the National Academy of Sciences - PNAS (02.12.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (02.12.2014)
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Journal Article
Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals
Uervirojnangkoorn, Monarin, Zeldin, Oliver B, Lyubimov, Artem Y, Hattne, Johan, Brewster, Aaron S, Sauter, Nicholas K, Brunger, Axel T, Weis, William I
Published in eLife (17.03.2015)
Published in eLife (17.03.2015)
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Journal Article
ATP-dependent conformational dynamics underlie the functional asymmetry of the replicative helicase from a minimalist eukaryote
Lyubimov, Artem Y, Costa, Alessandro, Bleichert, Franziska, Botchan, Michael R, Berger, James M
Published in Proceedings of the National Academy of Sciences - PNAS (24.07.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (24.07.2012)
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Journal Article
Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array
Lyubimov, Artem Y., Murray, Thomas D., Koehl, Antoine, Araci, Ismail Emre, Uervirojnangkoorn, Monarin, Zeldin, Oliver B., Cohen, Aina E., Soltis, S. Michael, Baxter, Elizabeth L., Brewster, Aaron S., Sauter, Nicholas K., Brunger, Axel T., Berger, James M.
Published in Acta crystallographica. Section D, Biological crystallography. (01.04.2015)
Published in Acta crystallographica. Section D, Biological crystallography. (01.04.2015)
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Journal Article
The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X‑ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography
Mathews, Irimpan I, Allison, Kim, Robbins, Thomas, Lyubimov, Artem Y, Uervirojnangkoorn, Monarin, Brunger, Axel T, Khosla, Chaitan, DeMirci, Hasan, McPhillips, Scott E, Hollenbeck, Michael, Soltis, Michael, Cohen, Aina E
Published in Biochemistry (Easton) (12.09.2017)
Published in Biochemistry (Easton) (12.09.2017)
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Journal Article
Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex
Lyubimov, Artem Y, Uervirojnangkoorn, Monarin, Zeldin, Oliver B, Zhou, Qiangjun, Zhao, Minglei, Brewster, Aaron S, Michels-Clark, Tara, Holton, James M, Sauter, Nicholas K, Weis, William I, Brunger, Axel T
Published in eLife (12.10.2016)
Published in eLife (12.10.2016)
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Journal Article
Structure of photosystem II and substrate binding at room temperature
Young, Iris D, Ibrahim, Mohamed, Chatterjee, Ruchira, Gul, Sheraz, Fuller, Franklin, Koroidov, Sergey, Brewster, Aaron S, Tran, Rosalie, Alonso-Mori, Roberto, Kroll, Thomas, Michels-Clark, Tara, Laksmono, Hartawan, Sierra, Raymond G, Stan, Claudiu A, Hussein, Rana, Zhang, Miao, Douthit, Lacey, Kubin, Markus, de Lichtenberg, Casper, Long Vo, Pham, Nilsson, Håkan, Cheah, Mun Hon, Shevela, Dmitriy, Saracini, Claudio, Bean, Mackenzie A, Seuffert, Ina, Sokaras, Dimosthenis, Weng, Tsu-Chien, Pastor, Ernest, Weninger, Clemens, Fransson, Thomas, Lassalle, Louise, Bräuer, Philipp, Aller, Pierre, Docker, Peter T, Andi, Babak, Orville, Allen M, Glownia, James M, Nelson, Silke, Sikorski, Marcin, Zhu, Diling, Hunter, Mark S, Lane, Thomas J, Aquila, Andy, Koglin, Jason E, Robinson, Joseph, Liang, Mengning, Boutet, Sébastien, Lyubimov, Artem Y, Uervirojnangkoorn, Monarin, Moriarty, Nigel W, Liebschner, Dorothee, Afonine, Pavel V, Waterman, David G, Evans, Gwyndaf, Wernet, Philippe, Dobbek, Holger, Weis, William I, Brunger, Axel T, Zwart, Petrus H, Adams, Paul D, Zouni, Athina, Messinger, Johannes, Bergmann, Uwe, Sauter, Nicholas K, Kern, Jan, Yachandra, Vittal K, Yano, Junko
Published in Nature (London) (15.12.2016)
Published in Nature (London) (15.12.2016)
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Journal Article
Atomic resolution crystallography reveals how changes in pH shape the protein microenvironment
Moustafa, Ibrahim, Vrielink, Alice, Lario, Paula I, Lyubimov, Artem Y
Published in Nature chemical biology (01.05.2006)
Published in Nature chemical biology (01.05.2006)
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Journal Article
A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditions
Murray, Thomas D., Lyubimov, Artem Y., Ogata, Craig M., Vo, Huy, Uervirojnangkoorn, Monarin, Brunger, Axel T., Berger, James M.
Published in Acta crystallographica. Section D, Biological crystallography. (01.10.2015)
Published in Acta crystallographica. Section D, Biological crystallography. (01.10.2015)
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Journal Article
Mechanistic and Evolutionary Insights from Comparative Enzymology of Phosphomonoesterases and Phosphodiesterases across the Alkaline Phosphatase Superfamily
Sunden, Fanny, AlSadhan, Ishraq, Lyubimov, Artem Y, Ressl, Susanne, Wiersma-Koch, Helen, Borland, Jamar, Brown, Clayton L, Johnson, Tory A, Singh, Zorawar, Herschlag, Daniel
Published in Journal of the American Chemical Society (02.11.2016)
Published in Journal of the American Chemical Society (02.11.2016)
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Journal Article
A user-friendly plug-and-play cyclic olefin copolymer-based microfluidic chip for room-temperature, fixed-target serial crystallography
Liu, Zhongrui, Gu, Kevin K, Shelby, Megan L, Gilbile, Deepshika, Lyubimov, Artem Y, Russi, Silvia, Cohen, Aina E, Narayanasamy, Sankar Raju, Botha, Sabine, Kupitz, Christopher, Sierra, Raymond G, Poitevin, Fredric, Gilardi, Antonio, Lisova, Stella, Coleman, Matthew A, Frank, Matthias, Kuhl, Tonya L
Published in Acta crystallographica. Section D, Biological crystallography. (01.10.2023)
Published in Acta crystallographica. Section D, Biological crystallography. (01.10.2023)
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Journal Article
Deep residual networks for crystallography trained on synthetic data
Mendez, Derek, Holton, James M., Lyubimov, Artem Y., Hollatz, Sabine, Mathews, Irimpan I., Cichosz, Aleksander, Martirosyan, Vardan, Zeng, Teo, Stofer, Ryan, Liu, Ruobin, Song, Jinhu, McPhillips, Scott, Soltis, Mike, Cohen, Aina E.
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2024)
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2024)
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Journal Article
Plug-and-play polymer microfluidic chips for hydrated, room temperature, fixed-target serial crystallography
Gilbile, Deepshika, Shelby, Megan L, Lyubimov, Artem Y, Wierman, Jennifer L, Monteiro, Diana C. F, Cohen, Aina E, Russi, Silvia, Coleman, Matthew A, Frank, Matthias, Kuhl, Tonya L
Published in Lab on a chip (07.12.2021)
Published in Lab on a chip (07.12.2021)
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Journal Article