Single sample scoring of molecular phenotypes
Foroutan, Momeneh, Bhuva, Dharmesh D, Lyu, Ruqian, Horan, Kristy, Cursons, Joseph, Davis, Melissa J
Published in BMC bioinformatics (06.11.2018)
Published in BMC bioinformatics (06.11.2018)
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Journal Article
Personalized genome structure via single gamete sequencing
Lyu, Ruqian, Tsui, Vanessa, McCarthy, Davis J, Crismani, Wayne
Published in Genome Biology (19.04.2021)
Published in Genome Biology (19.04.2021)
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Journal Article
Key signaling networks are dysregulated in patients with the adipose tissue disorder, lipedema
Ishaq, Musarat, Bandara, Nadeeka, Morgan, Steven, Nowell, Cameron, Mehdi, Ahmad M., Lyu, Ruqian, McCarthy, Davis, Anderson, Dovile, Creek, Darren J., Achen, Marc G., Shayan, Ramin, Karnezis, Tara
Published in International Journal of Obesity (01.03.2022)
Published in International Journal of Obesity (01.03.2022)
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Journal Article
Using singscore to predict mutation status in acute myeloid leukemia from transcriptomic signatures [version 3; peer review: 2 approved]
Bhuva, Dharmesh D, Foroutan, Momeneh, Xie, Yi, Lyu, Ruqian, Cursons, Joseph, Davis, Melissa J
Published in F1000 research (01.01.2019)
Published in F1000 research (01.01.2019)
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Journal Article
Epigenetic reactivation of tumor suppressor genes with CRISPRa technologies as precision therapy for hepatocellular carcinoma
Sgro, Agustin, Cursons, Joseph, Waryah, Charlene, Woodward, Eleanor A, Foroutan, Momeneh, Lyu, Ruqian, Yeoh, George C T, Leedman, Peter J, Blancafort, Pilar
Published in Clinical epigenetics (29.04.2023)
Published in Clinical epigenetics (29.04.2023)
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Journal Article
Case Report: Hypoglycemia Due to a Novel Activating Glucokinase Variant in an Adult - a Molecular Approach
Koneshamoorthy, Anojian, Seniveratne-Epa, Dilan, Calder, Genevieve, Sawyer, Matthew, Kay, Thomas W H, Farrell, Stephen, Loudovaris, Thomas, Mariana, Lina, McCarthy, Davis, Lyu, Ruqian, Liu, Xin, Thorn, Peter, Tong, Jason, Chin, Lit Kim, Zacharin, Margaret, Trainer, Alison, Taylor, Shelby, MacIsaac, Richard J, Sachithanandan, Nirupa, Thomas, Helen E, Krishnamurthy, Balasubramanian
Published in Frontiers in endocrinology (Lausanne) (17.03.2022)
Published in Frontiers in endocrinology (Lausanne) (17.03.2022)
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Journal Article
Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes
McCarthy, Davis J., Rostom, Raghd, Huang, Yuanhua, Kunz, Daniel J., Danecek, Petr, Bonder, Marc Jan, Hagai, Tzachi, Lyu, Ruqian, Wang, Wenyi, Gaffney, Daniel J., Simons, Benjamin D., Stegle, Oliver, Teichmann, Sarah A.
Published in Nature methods (01.04.2020)
Published in Nature methods (01.04.2020)
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Journal Article
Fancm has dual roles in the limiting of meiotic crossovers and germ cell maintenance in mammals
Tsui, Vanessa, Lyu, Ruqian, Novakovic, Stevan, Stringer, Jessica M., Dunleavy, Jessica E.M., Granger, Elissah, Semple, Tim, Leichter, Anna, Martelotto, Luciano G., Merriner, D. Jo, Liu, Ruijie, McNeill, Lucy, Zerafa, Nadeen, Hoffmann, Eva R., O’Bryan, Moira K., Hutt, Karla, Deans, Andrew J., Heierhorst, Jörg, McCarthy, Davis J., Crismani, Wayne
Published in Cell genomics (09.08.2023)
Published in Cell genomics (09.08.2023)
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Journal Article
Using singscore to predict mutations in acute myeloid leukemia from transcriptomic signatures [version 1; peer review: 1 approved, 1 approved with reservations]
Bhuva, Dharmesh D, Foroutan, Momeneh, Xie, Yi, Lyu, Ruqian, Cursons, Joseph, Davis, Melissa J
Published in F1000 research (2019)
Published in F1000 research (2019)
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Journal Article
Using singscore to predict mutation status in acute myeloid leukemia from transcriptomic signatures [version 2; peer review: 1 approved, 1 approved with reservations]
Bhuva, Dharmesh D, Foroutan, Momeneh, Xie, Yi, Lyu, Ruqian, Cursons, Joseph, Davis, Melissa J
Published in F1000 research (2019)
Published in F1000 research (2019)
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Journal Article
Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis
Vannan, Annika, Lyu, Ruqian, Williams, Arianna L, Negretti, Nicholas M, Mee, Evan D, Hirsh, Joseph, Hirsh, Samuel, Nichols, David S, Calvi, Carla L, Taylor, Chase J, Polosukhin, Vasiliy V, Serezani, Ana Pm, McCall, A Scott, Gokey, Jason J, Shim, Heejung, Ware, Lorraine B, Bacchetta, Matthew J, Shaver, Ciara M, Blackwell, Timothy S, Walia, Rajat, Sucre, Jennifer Ms, Kropski, Jonathan A, McCarthy, Davis J, Banovich, Nicholas E
Published in bioRxiv : the preprint server for biology (17.12.2023)
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Published in bioRxiv : the preprint server for biology (17.12.2023)
Journal Article
Proliferation drives quorum sensing of microbial products in human macrophage populations
Rajab, Nadia, Linden Jamie Gearing, Lyu, Ruqian, Prawer, Yair Dj, Angel, Paul W, Grimmond, Sean Michael, Laslett, Andrew L, Mccarthy, Davis J, Wells, Christine
Published in bioRxiv (30.01.2023)
Published in bioRxiv (30.01.2023)
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Paper
Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis
Vannan, Annika, Lyu, Ruqian, Williams, Arianna L, Negretti, Nicholas M, Mee, Evan D, Hirsh, Joseph, Hirsh, Samuel, Nichols, David S, Calvi, Carla L, Talor, Chase J, Polosukhin, Vasiliy V, Serezani, Anan Pm, Mccall, A Scott, Gokey, Jason J, Shim, Heejung, Ware, Lorraine B, Bacchetta, Matthew J, Shaver, Ciara M, Blackwell, Timothy S, Walia, Rajat, Jennifer Ms Sucre, Kropski, Jonathan A, Mccarthy, Davis J, Banovich, Nicholas E
Published in bioRxiv (17.12.2023)
Published in bioRxiv (17.12.2023)
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Paper
Case Report: Hypoglycemia Due to a Novel Activating Glucokinase Variant in an Adult - a Molecular Approach
Koneshamoorthy, Anojian, Seniveratne-Epa, Dilan, Calder, Genevieve, Sawyer, Matthew, Kay, Thomas W H, Farrell, Stephen, Loudovaris, Thomas, Mariana, Lina, McCarthy, Davis, Lyu, Ruqian, Liu, Xin, Thorn, Peter, Tong, Jason, Chin, Lit Kim, Zacharin, Margaret, Trainer, Alison, Taylor, Shelby, MacIsaac, Richard J, Sachithanandan, Nirupa, Thomas, Helen E, Krishnamurthy, Balasubramanian
Published in Frontiers in endocrinology (01.01.2022)
Published in Frontiers in endocrinology (01.01.2022)
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