DeepFeature: feature selection in nonimage data using convolutional neural network
Sharma, Alok, Lysenko, Artem, Boroevich, Keith A, Vans, Edwin, Tsunoda, Tatsuhiko
Published in Briefings in bioinformatics (05.11.2021)
Published in Briefings in bioinformatics (05.11.2021)
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Journal Article
DeepInsight-3D architecture for anti-cancer drug response prediction with deep-learning on multi-omics
Sharma, Alok, Lysenko, Artem, Boroevich, Keith A, Tsunoda, Tatsuhiko
Published in Scientific reports (11.02.2023)
Published in Scientific reports (11.02.2023)
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Journal Article
Enhanced analysis of tabular data through Multi-representation DeepInsight
Sharma, Alok, López, Yosvany, Jia, Shangru, Lysenko, Artem, Boroevich, Keith A, Tsunoda, Tatsuhiko
Published in Scientific reports (04.06.2024)
Published in Scientific reports (04.06.2024)
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Journal Article
Cerebrospinal fluid proteome shows disrupted neuronal development in multiple sclerosis
Mosleth, Ellen F, Vedeler, Christian Alexander, Liland, Kristian Hovde, McLeod, Anette, Bringeland, Gerd Haga, Kroondijk, Liesbeth, Berven, Frode Steingrimsen, Lysenko, Artem, Rawlings, Christopher J, Eid, Karim El-Hajj, Opsahl, Jill Anette, Gjertsen, Bjørn Tore, Myhr, Kjell-Morten, Gavasso, Sonia
Published in Scientific reports (18.02.2021)
Published in Scientific reports (18.02.2021)
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Journal Article
HseSUMO: Sumoylation site prediction using half-sphere exposures of amino acids residues
Sharma, Alok, Lysenko, Artem, López, Yosvany, Dehzangi, Abdollah, Sharma, Ronesh, Reddy, Hamendra, Sattar, Abdul, Tsunoda, Tatsuhiko
Published in BMC genomics (18.04.2019)
Published in BMC genomics (18.04.2019)
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Journal Article
An integrative machine learning approach for prediction of toxicity-related drug safety
Lysenko, Artem, Sharma, Alok, Boroevich, Keith A, Tsunoda, Tatsuhiko
Published in Life science alliance (01.12.2018)
Published in Life science alliance (01.12.2018)
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Journal Article
PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets
Janowska-Sejda, Elzbieta I, Lysenko, Artem, Urban, Martin, Rawlings, Chris, Tsoka, Sophia, Hammond-Kosack, Kim E
Published in Frontiers in microbiology (06.12.2019)
Published in Frontiers in microbiology (06.12.2019)
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Journal Article
Arete - candidate gene prioritization using biological network topology with additional evidence types
Lysenko, Artem, Boroevich, Keith Anthony, Tsunoda, Tatsuhiko
Published in BioData mining (06.07.2017)
Published in BioData mining (06.07.2017)
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Journal Article
Discovering study-specific gene regulatory networks
Bo, Valeria, Curtis, Tanya, Lysenko, Artem, Saqi, Mansoor, Swift, Stephen, Tucker, Allan
Published in PloS one (05.09.2014)
Published in PloS one (05.09.2014)
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Journal Article
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
Lysenko, Artem, Defoin-Platel, Michael, Hassani-Pak, Keywan, Taubert, Jan, Hodgman, Charlie, Rawlings, Christopher J, Saqi, Mansoor
Published in BMC bioinformatics (25.05.2011)
Published in BMC bioinformatics (25.05.2011)
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Journal Article
Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum
Lysenko, Artem, Urban, Martin, Bennett, Laura, Tsoka, Sophia, Janowska-Sejda, Elzbieta, Rawlings, Chris J, Hammond-Kosack, Kim E, Saqi, Mansoor
Published in PloS one (04.07.2013)
Published in PloS one (04.07.2013)
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Journal Article
AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations
Defoin-Platel, Michael, Hindle, Matthew M, Lysenko, Artem, Powers, Stephen J, Habash, Dimah Z, Rawlings, Christopher J, Saqi, Mansoor
Published in BMC bioinformatics (03.11.2011)
Published in BMC bioinformatics (03.11.2011)
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Journal Article
Immune subtypes and neoantigen-related immune evasion in advanced colorectal cancer
Sugawara, Toshitaka, Miya, Fuyuki, Ishikawa, Toshiaki, Lysenko, Artem, Nishino, Jo, Kamatani, Takashi, Takemoto, Akira, Boroevich, Keith A., Kakimi, Kazuhiro, Kinugasa, Yusuke, Tanabe, Minoru, Tsunoda, Tatsuhiko
Published in iScience (18.02.2022)
Published in iScience (18.02.2022)
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Journal Article
Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum
Bennett, Laura, Lysenko, Artem, Papageorgiou, Lazaros G., Urban, Martin, Hammond-Kosack, Kim, Rawlings, Chris, Saqi, Mansoor, Tsoka, Sophia
Published in Computational Methods in Systems Biology
Published in Computational Methods in Systems Biology
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Book Chapter
Analysis and visualisation of RDF resources in Ondex
Canevet, Catherine, Lysenko, Artem, Splendiani, Andrea, Pocock, Matthew, Rawlings, Chris
Published in Nature precedings (23.12.2010)
Published in Nature precedings (23.12.2010)
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Journal Article
Advances in AI and machine learning for predictive medicine
Sharma, Alok, Lysenko, Artem, Jia, Shangru, Boroevich, Keith A, Tsunoda, Tatsuhiko
Published in Journal of human genetics (29.02.2024)
Published in Journal of human genetics (29.02.2024)
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Journal Article