POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins
Zhao, Weihao, Zhang, Shang, Zhu, Yumin, Xi, Xiaochen, Bao, Pengfei, Ma, Ziyuan, Kapral, Thomas H, Chen, Shuyuan, Zagrovic, Bojan, Yang, Yucheng T, Lu, Zhi John
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Noncoding RNAs Serve as Diagnosis and Prognosis Biomarkers for Hepatocellular Carcinoma
Tan, Chang, Cao, Jingyi, Chen, Lu, Xi, Xiaochen, Wang, Siqi, Zhu, Yumin, Yang, Liuqing, Ma, Longteng, Wang, Dong, Yin, Jianhua, Zhang, Ti, John Lu, Zhi
Published in Clinical chemistry (Baltimore, Md.) (01.07.2019)
Published in Clinical chemistry (Baltimore, Md.) (01.07.2019)
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Microarray is an efficient tool for circRNA profiling
Li, Shasha, Teng, Shuaishuai, Xu, Junquan, Su, Guannan, Zhang, Yu, Zhao, Jianqing, Zhang, Suwei, Wang, Haiyan, Qin, Wenyan, Lu, Zhi John, Guo, Yong, Zhu, Qianyong, Wang, Dong
Published in Briefings in bioinformatics (19.07.2019)
Published in Briefings in bioinformatics (19.07.2019)
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POSTAR2: deciphering the post-transcriptional regulatory logics
Zhu, Yumin, Xu, Gang, Yang, Yucheng T, Xu, Zhiyu, Chen, Xinduo, Shi, Binbin, Xie, Daoxin, Lu, Zhi John, Wang, Pengyuan
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Recurrently deregulated lncRNAs in hepatocellular carcinoma
Yang, Yang, Chen, Lei, Gu, Jin, Zhang, Hanshuo, Yuan, Jiapei, Lian, Qiuyu, Lv, Guishuai, Wang, Siqi, Wu, Yang, Yang, Yu-Cheng T, Wang, Dongfang, Liu, Yang, Tang, Jing, Luo, Guijuan, Li, Yang, Hu, Long, Sun, Xinbao, Wang, Dong, Guo, Mingzhou, Xi, Qiaoran, Xi, Jianzhong, Wang, Hongyang, Zhang, Michael Q, Lu, Zhi John
Published in Nature communications (13.02.2017)
Published in Nature communications (13.02.2017)
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Characterization of stress‐responsive lncRNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural features
Di, Chao, Yuan, Jiapei, Wu, Yue, Li, Jingrui, Lin, Huixin, Hu, Long, Zhang, Ting, Qi, Yijun, Gerstein, Mark B, Guo, Yan, Lu, Zhi John
Published in The Plant journal : for cell and molecular biology (01.12.2014)
Published in The Plant journal : for cell and molecular biology (01.12.2014)
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RISE: a database of RNA interactome from sequencing experiments
Gong, Jing, Shao, Di, Xu, Kui, Lu, Zhipeng, Lu, Zhi John, Yang, Yucheng T, Zhang, Qiangfeng Cliff
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Critical roles of long noncoding RNAs in Drosophila spermatogenesis
Wen, Kejia, Yang, Lijuan, Xiong, Tuanlin, Di, Chao, Ma, Danhui, Wu, Menghua, Xue, Zhaoyu, Zhang, Xuedi, Long, Li, Zhang, Weimin, Zhang, Jiaying, Bi, Xiaolin, Dai, Junbiao, Zhang, Qiangfeng, Lu, Zhi John, Gao, Guanjun
Published in Genome research (01.09.2016)
Published in Genome research (01.09.2016)
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POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins
Hu, Boqin, Yang, Yu-Cheng T, Huang, Yiming, Zhu, Yumin, Lu, Zhi John
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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A Nodal enhanced micropeptide NEMEP regulates glucose uptake during mesendoderm differentiation of embryonic stem cells
Fu, Haipeng, Wang, Tingyu, Kong, Xiaohui, Yan, Kun, Yang, Yang, Cao, Jingyi, Yuan, Yafei, Wang, Nan, Kee, Kehkooi, Lu, Zhi John, Xi, Qiaoran
Published in Nature communications (09.07.2022)
Published in Nature communications (09.07.2022)
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Systematic identification of synergistic drug pairs targeting HIV
XU TAN, LONG HU, LUQUETTE, Lovelace J, GENG GAO, YIFANG LIU, HONGJING QU, RUIBIN XI, ZHI JOHN LU, PARK, Peter J, ELLEDGE, Stephen J
Published in Nature biotechnology (01.11.2012)
Published in Nature biotechnology (01.11.2012)
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RNA Biomarkers: Frontier of Precision Medicine for Cancer
Xi, Xiaochen, Li, Tianxiao, Huang, Yiming, Sun, Jiahui, Zhu, Yumin, Yang, Yang, Lu, Zhi John
Published in Non-coding RNA (20.02.2017)
Published in Non-coding RNA (20.02.2017)
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RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data
Wu, Yang, Qu, Rihao, Huang, Yiming, Shi, Binbin, Liu, Mengrong, Li, Yang, Lu, Zhi John
Published in Nucleic acids research (08.07.2016)
Published in Nucleic acids research (08.07.2016)
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Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
Niu, Wei, Lu, Zhi John, Zhong, Mei, Sarov, Mihail, Murray, John I, Brdlik, Cathleen M, Janette, Judith, Chen, Chao, Alves, Pedro, Preston, Elicia, Slightham, Cindie, Jiang, Lixia, Hyman, Anthony A, Kim, Stuart K, Waterston, Robert H, Gerstein, Mark, Snyder, Michael, Reinke, Valerie
Published in Genome research (01.02.2011)
Published in Genome research (01.02.2011)
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Cancer type classification using plasma cell-free RNAs derived from human and microbes
Chen, Shanwen, Jin, Yunfan, Wang, Siqi, Xing, Shaozhen, Wu, Yingchao, Tao, Yuhuan, Ma, Yongchen, Zuo, Shuai, Liu, Xiaofan, Hu, Yichen, Chen, Hongyan, Luo, Yuandeng, Xia, Feng, Xie, Chuanming, Yin, Jianhua, Wang, Xin, Liu, Zhihua, Zhang, Ning, Zech Xu, Zhenjiang, Lu, Zhi John, Wang, Pengyuan
Published in eLife (11.07.2022)
Published in eLife (11.07.2022)
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Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons
Li, Jia, Sun, Lei, Peng, Xue-Liang, Yu, Xiao-Ming, Qi, Shao-Jun, Lu, Zhi John, Han, Jing-Dong J, Shen, Qin
Published in PLoS genetics (24.03.2021)
Published in PLoS genetics (24.03.2021)
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