Mapping the Neural Substrates of Behavior
Robie, Alice A., Hirokawa, Jonathan, Edwards, Austin W., Umayam, Lowell A., Lee, Allen, Phillips, Mary L., Card, Gwyneth M., Korff, Wyatt, Rubin, Gerald M., Simpson, Julie H., Reiser, Michael B., Branson, Kristin
Published in Cell (13.07.2017)
Published in Cell (13.07.2017)
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Journal Article
Synaptic circuits and their variations within different columns in the visual system of Drosophila
Takemura, Shin-ya, Xu, C. Shan, Lu, Zhiyuan, Rivlin, Patricia K., Parag, Toufiq, Olbris, Donald J., Plaza, Stephen, Zhao, Ting, Katz, William T., Umayam, Lowell, Weaver, Charlotte, Hess, Harald F., Horne, Jane Anne, Nunez-Iglesias, Juan, Aniceto, Roxanne, Chang, Lei-Ann, Lauchie, Shirley, Nasca, Ashley, Ogundeyi, Omotara, Sigmund, Christopher, Takemura, Satoko, Tran, Julie, Langille, Carlie, Le Lacheur, Kelsey, McLin, Sari, Shinomiya, Aya, Chklovskii, Dmitri B., Meinertzhagen, Ian A., Scheffer, Louis K.
Published in Proceedings of the National Academy of Sciences - PNAS (03.11.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (03.11.2015)
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Journal Article
A connectome of a learning and memory center in the adult Drosophila brain
Takemura, Shin-Ya, Aso, Yoshinori, Hige, Toshihide, Wong, Allan, Lu, Zhiyuan, Xu, C Shan, Rivlin, Patricia K, Hess, Harald, Zhao, Ting, Parag, Toufiq, Berg, Stuart, Huang, Gary, Katz, William, Olbris, Donald J, Plaza, Stephen, Umayam, Lowell, Aniceto, Roxanne, Chang, Lei-Ann, Lauchie, Shirley, Ogundeyi, Omotara, Ordish, Christopher, Shinomiya, Aya, Sigmund, Christopher, Takemura, Satoko, Tran, Julie, Turner, Glenn C, Rubin, Gerald M, Scheffer, Louis K
Published in eLife (18.07.2017)
Published in eLife (18.07.2017)
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Journal Article
neuPrint: An open access tool for EM connectomics
Plaza, Stephen M., Clements, Jody, Dolafi, Tom, Umayam, Lowell, Neubarth, Nicole N., Scheffer, Louis K., Berg, Stuart
Published in Frontiers in neuroinformatics (20.07.2022)
Published in Frontiers in neuroinformatics (20.07.2022)
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Journal Article
Short Interfering RNAs Can Induce Unexpected and Divergent Changes in the Levels of Untargeted Proteins in Mammalian Cells
Scacheri, Peter C., Rozenblatt-Rosen, Orit, Caplen, Natasha J., Wolfsberg, Tyra G., Umayam, Lowell, Lee, Jeffrey C., Hughes, Christina M., Shanmugam, Kalai Selvi, Bhattacharjee, Arindam, Meyerson, Matthew, Collins, Francis S., Vogelstein, Bert
Published in Proceedings of the National Academy of Sciences - PNAS (17.02.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (17.02.2004)
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Journal Article
The Comprehensive Microbial Resource
Peterson, J D, Umayam, L A, Dickinson, T, Hickey, E K, White, O
Published in Nucleic acids research (01.01.2001)
Published in Nucleic acids research (01.01.2001)
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Journal Article
GeneLink: a database to facilitate genetic studies of complex traits
Gillanders, Elizabeth M, Masiello, Anthony, Gildea, Derek, Umayam, Lowell, Duggal, Priya, Jones, Mary Pat, Klein, Alison P, Freas-Lutz, Diana, Ibay, Grace, Trout, Ken, Wolfsberg, Tyra G, Trent, Jeffrey M, Bailey-Wilson, Joan E, Baxevanis, Andreas D
Published in BMC genomics (18.10.2004)
Published in BMC genomics (18.10.2004)
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Journal Article
neuPrint: Analysis Tools for EM Connectomics
Clements, Jody, Dolafi, Tom, Umayam, Lowell, Neubarth, Nicole L, Berg, Stuart, Scheffer, Louis K, Plaza, Stephen M
Published in bioRxiv (17.01.2020)
Published in bioRxiv (17.01.2020)
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Paper
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis
Fraser, Claire M, Heidelberg, John F, Paulsen, Ian T, Nelson, Karen E, Gaidos, Eric J, Nelson, William C, Read, Timothy D, Eisen, Jonathan A, Seshadri, Rekha, Ward, Naomi, Methe, Barbara, Clayton, Rebecca A, Meyer, Terry, Tsapin, Alexandre, Scott, James, Beanan, Maureen, Brinkac, Lauren, Daugherty, Sean, DeBoy, Robert T, Dodson, Robert J, Durkin, A. Scott, Haft, Daniel H, Kolonay, James F, Madupu, Ramana, Peterson, Jeremy D, Umayam, Lowell A, White, Owen, Wolf, Alex M, Vamathevan, Jessica, Weidman, Janice, Impraim, Marjorie, Lee, Kathy, Berry, Kristy, Lee, Chris, Mueller, Jacob, Khouri, Hoda, Gill, John, Utterback, Terry R, McDonald, Lisa A, Feldblyum, Tamara V, Smith, Hamilton O, Venter, J. Craig, Nealson, Kenneth H
Published in Nature biotechnology (01.11.2002)
Published in Nature biotechnology (01.11.2002)
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Journal Article
Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae
Tettelin, Hervé, Nelson, Karen E., Paulsen, Ian T., Eisen, Jonathan A., Read, Timothy D., Peterson, Scott, Heidelberg, John, DeBoy, Robert T., Haft, Daniel H., Dodson, Robert J., Durkin, A. Scott, Gwinn, Michelle, Kolonay, James F., Nelson, William C., Peterson, Jeremy D., Umayam, Lowell A., White, Owen, Salzberg, Steven L., Lewis, Matthew R., Radune, Diana, Holtzapple, Erik, Khouri, Hoda, Wolf, Alex M., Utterback, Terry R., Hansen, Cheryl L., McDonald, Lisa A., Feldblyum, Tamara V., Angiuoli, Samuel, Dickinson, Tanja, Hickey, Erin K., Holt, Ingeborg E., Loftus, Brendan J., Yang, Fan, Smith, Hamilton O., Venter, J. Craig, Dougherty, Brian A., Morrison, Donald A., Hollingshead, Susan K., Fraser, Claire M.
Published in Science (American Association for the Advancement of Science) (20.07.2001)
Published in Science (American Association for the Advancement of Science) (20.07.2001)
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Journal Article
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
Smith, Hamilton O, Peterson, Jeremy D, Nelson, Karen E, Gill, Steven R, Mekalanos, John J, Fleishmann, Robert D, McDonald, Lisa, Hickey, Erin K, Nierman, William C, Bass, Steven, Dragoi, Ioana, White, Owen, Tettelin, Hervé, Fraser, Claire M, Umayam, Lowell, Richardson, Delwood, Read, Timothy D, Ermolaeva, Maria D, Colwell, Rita R, Sellers, Patrick, Clayton, Rebecca A, Eisen, Jonathan A, Utterback, Teresa, Dodson, Robert J, Salzberg, Steven L, Venter, J. Craig, Gwinn, Michelle L, Haft, Daniel H, Vamathevan, Jessica, Qin, Haiying, Nelson, William C, Heidelberg, John F
Published in Nature (London) (03.08.2000)
Published in Nature (London) (03.08.2000)
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Journal Article
The Brucella suis Genome Reveals Fundamental Similarities between Animal and Plant Pathogens and Symbionts
Paulsen, Ian T., Seshadri, Rekha, Nelson, Karen E., Eisen, Jonathan A., Heidelberg, John F., Read, Timothy D., Dodson, Robert J., Umayam, Lowell, Brinkac, Lauren M., Beanan, Maureen J., Daugherty, Sean C., Deboy, Robert T., Durkin, A. Scott, Kolonay, James F., Madupu, Ramana, Nelson, William C., Ayodeji, Bola, Kraul, Margaret, Shetty, Jyoti, Malek, Joel, van Aken, Susan E., Riedmuller, Steven, Tettelin, Herve, Gill, Steven R., White, Owen, Salzberg, Steven L., Hoover, David L., Lindler, Luther E., Halling, Shirley M., Boyle, Stephen M., Fraser, Claire M.
Published in Proceedings of the National Academy of Sciences - PNAS (01.10.2002)
Published in Proceedings of the National Academy of Sciences - PNAS (01.10.2002)
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Journal Article
Comparative Genome Sequencing for Discovery of Novel Polymorphisms in Bacillus anthracis
Read, Timothy D., Salzberg, Steven L., Pop, Mihai, Shumway, Martin, Umayam, Lowell, Jiang, Lingxia, Holtzapple, Erik, Busch, Joseph D., Smith, Kimothy L., Schupp, James M., Solomon, Daniel, Keim, Paul, Fraser, Claire M.
Published in Science (American Association for the Advancement of Science) (14.06.2002)
Published in Science (American Association for the Advancement of Science) (14.06.2002)
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Journal Article
The Complete Genome Sequence of Chlorobium tepidum TLS, A Photosynthetic, Anaerobic, Green-Sulfur Bacterium
Eisen, Jonathan A., Nelson, Karen E., Paulsen, Ian T., Heidelberg, John F., Wu, Martin, Dodson, Robert J., Deboy, Robert, Gwinn, Michelle L., Nelson, William C., Haft, Daniel H., Hickey, Erin K., Peterson, Jeremy D., Durkin, A. Scott, Kolonay, James L., Yang, Fan, Holt, Ingeborg, Umayam, Lowell A., Mason, Tanya, Brenner, Michael, Shea, Terrance P., Parksey, Debbie, Nierman, William C., Feldblyum, Tamara V., Hansen, Cheryl L., Craven, M. Brook, Radune, Diana, Vamathevan, Jessica, Khouri, Hoda, White, Owen, Gruber, Tanja M., Ketchum, Karen A., Venter, J. Craig, Tettelin, Hervé, Bryant, Donald A., Fraser, Claire M.
Published in Proceedings of the National Academy of Sciences - PNAS (09.07.2002)
Published in Proceedings of the National Academy of Sciences - PNAS (09.07.2002)
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Journal Article
Synaptic circuits and their variations within different columns in the visual system ofDrosophila
Takemura, Shin-ya, Xu, C. Shan, Lu, Zhiyuan, Rivlin, Patricia K., Parag, Toufiq, Olbris, Donald J., Plaza, Stephen, Zhao, Ting, Katz, William T., Umayam, Lowell, Weaver, Charlotte, Hess, Harald F., Horne, Jane Anne, Nunez-Iglesias, Juan, Aniceto, Roxanne, Chang, Lei-Ann, Lauchie, Shirley, Nasca, Ashley, Ogundeyi, Omotara, Sigmund, Christopher, Takemura, Satoko, Tran, Julie, Langille, Carlie, Le Lacheur, Kelsey, McLin, Sari, Shinomiya, Aya, Chklovskii, Dmitri B., Meinertzhagen, Ian A., Scheffer, Louis K.
Published in Proceedings of the National Academy of Sciences - PNAS (03.11.2015)
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Published in Proceedings of the National Academy of Sciences - PNAS (03.11.2015)
Journal Article
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana
Lin, Xiaoying, Kaul, Samir, Rounsley, Steve, Shea, Terrance P, Benito, Maria-Ines, Town, Christopher D, Fujii, Claire Y, Mason, Tanya, Bowman, Cheryl L, Barnstead, Mary, Feldblyum, Tamara V, Buell, C. Robin, Ketchum, Karen A, Lee, John, Ronning, Catherine M, Koo, Hean L, Moffat, Kelly S, Cronin, Lisa A, Shen, Mian, Pai, Grace, Van Aken, Susan, Umayam, Lowell, Tallon, Luke J, Gill, John E, Adams, Mark D, Carrera, Ana J, Creasy, Todd H, Goodman, Howard M, Somerville, Chris R, Copenhaver, Greg P, Preuss, Daphne, Nierman, William C, White, Owen, Eisen, Jonathan A, Salzberg, Steven L, Fraser, Claire M, Venter, J. Craig
Published in Nature (London) (16.12.1999)
Published in Nature (London) (16.12.1999)
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Journal Article
The ENCODEdb portal: simplified access to ENCODE Consortium data
Elnitski, Laura L, Shah, Prachi, Moreland, R Travis, Umayam, Lowell, Wolfsberg, Tyra G, Baxevanis, Andreas D
Published in Genome Research (01.06.2007)
Published in Genome Research (01.06.2007)
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Journal Article
Connectome-driven neural inventory of a complete visual system
Nern, Aljoscha, Loesche, Frank, Takemura, Shin-Ya, Burnett, Laura E, Dreher, Marisa, Gruntman, Eyal, Hoeller, Judith, Huang, Gary B, Januszewski, Michał, Klapoetke, Nathan C, Koskela, Sanna, Longden, Kit D, Lu, Zhiyuan, Preibisch, Stephan, Qiu, Wei, Rogers, Edward M, Seenivasan, Pavithraa, Zhao, Arthur, Bogovic, John, Canino, Brandon S, Clements, Jody, Cook, Michael, Finley-May, Samantha, Flynn, Miriam A, Hameed, Imran, Fragniere, Alexandra Mc, Hayworth, Kenneth J, Hopkins, Gary Patrick, Hubbard, Philip M, Katz, William T, Kovalyak, Julie, Lauchie, Shirley A, Leonard, Meghan, Lohff, Alanna, Maldonado, Charli A, Mooney, Caroline, Okeoma, Nneoma, Olbris, Donald J, Ordish, Christopher, Paterson, Tyler, Phillips, Emily M, Pietzsch, Tobias, Salinas, Jennifer Rivas, Rivlin, Patricia K, Schlegel, Philipp, Scott, Ashley L, Scuderi, Louis A, Takemura, Satoko, Talebi, Iris, Thomson, Alexander, Trautman, Eric T, Umayam, Lowell, Walsh, Claire, Walsh, John J, Xu, C Shan, Yakal, Emily A, Yang, Tansy, Zhao, Ting, Funke, Jan, George, Reed, Hess, Harald F, Jefferis, Gregory Sxe, Knecht, Christopher, Korff, Wyatt, Plaza, Stephen M, Romani, Sandro, Saalfeld, Stephan, Scheffer, Louis K, Berg, Stuart, Rubin, Gerald M, Reiser, Michael B
Published in bioRxiv (01.06.2024)
Published in bioRxiv (01.06.2024)
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Journal Article
Accelerated EM Connectome Reconstruction using 3D Visualization and Segmentation Graphs
Hubbard, Philip M, Berg, Stuart, Zhao, Ting, Olbris, Donald J, Umayam, Lowell, Maitin-Shepard, Jeremy, Januszewski, Michal, Katz, William T, Neace, Erika R, Plaza, Stephen M
Published in bioRxiv (17.01.2020)
Published in bioRxiv (17.01.2020)
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Paper
Informatic and genomic analysis of melanocyte cDNA libraries as a resource for the study of melanocyte development and function
Baxter, Laura L., Hsu, Benjamin J., Umayam, Lowell, Wolfsberg, Tyra G., Larson, Denise M., Frith, Martin C., Kawai, Jun, Hayashizaki, Yoshihide, Carninci, Piero, Pavan, William J.
Published in Pigment cell research (01.06.2007)
Published in Pigment cell research (01.06.2007)
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Journal Article