Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
Zhalnina, Kateryna, Louie, Katherine B, Hao, Zhao, Mansoori, Nasim, da Rocha, Ulisses Nunes, Shi, Shengjing, Cho, Heejung, Karaoz, Ulas, Loqué, Dominique, Bowen, Benjamin P, Firestone, Mary K, Northen, Trent R, Brodie, Eoin L
Published in Nature microbiology (01.04.2018)
Published in Nature microbiology (01.04.2018)
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Journal Article
Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays)
Murphy, Katherine M, Edwards, Joseph, Louie, Katherine B, Bowen, Benjamin P, Sundaresan, Venkatesan, Northen, Trent R, Zerbe, Philipp
Published in Scientific reports (11.01.2021)
Published in Scientific reports (11.01.2021)
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Journal Article
SIMILE enables alignment of tandem mass spectra with statistical significance
Treen, Daniel G C, Wang, Mingxun, Xing, Shipei, Louie, Katherine B, Huan, Tao, Dorrestein, Pieter C, Northen, Trent R, Bowen, Benjamin P
Published in Nature communications (06.05.2022)
Published in Nature communications (06.05.2022)
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Journal Article
Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis
Roth, Melissa S, Gallaher, Sean D, Westcott, Daniel J, Iwai, Masakazu, Louie, Katherine B, Mueller, Maria, Walter, Andreas, Foflonker, Fatima, Bowen, Benjamin P, Ataii, Nassim N, Song, Junha, Chen, Jian-Hua, Blaby-Haas, Crysten E, Larabell, Carolyn, Auer, Manfred, Northen, Trent R, Merchant, Sabeeha S, Niyogi, Krishna K
Published in The Plant cell (01.03.2019)
Published in The Plant cell (01.03.2019)
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Journal Article
A robust gene-stacking method utilizing yeast assembly for plant synthetic biology
Shih, Patrick M, Vuu, Khanh, Mansoori, Nasim, Ayad, Leïla, Louie, Katherine B, Bowen, Benjamin P, Northen, Trent R, Loqué, Dominique
Published in Nature communications (26.10.2016)
Published in Nature communications (26.10.2016)
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Journal Article
Microbial Ecology on Solar Panels in Berkeley, CA, United States
Porcar, Manuel, Louie, Katherine B, Kosina, Suzanne M, Van Goethem, Marc W, Bowen, Benjamin P, Tanner, Kristie, Northen, Trent R
Published in Frontiers in microbiology (11.12.2018)
Published in Frontiers in microbiology (11.12.2018)
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Journal Article
Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
Swift, Candice L, Louie, Katherine B, Bowen, Benjamin P, Hooker, Casey A, Solomon, Kevin V, Singan, Vasanth, Daum, Chris, Pennacchio, Christa P, Barry, Kerrie, Shutthanandan, Vaithiyalingam, Evans, James E, Grigoriev, Igor V, Northen, Trent R, O'Malley, Michelle A
Published in mBio (31.08.2021)
Published in mBio (31.08.2021)
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Journal Article
“Replica-Extraction-Transfer” Nanostructure-Initiator Mass Spectrometry Imaging of Acoustically Printed Bacteria
Louie, Katherine B, Bowen, Benjamin P, Cheng, Xiaoliang, Berleman, James E, Chakraborty, Romy, Deutschbauer, Adam, Arkin, Adam, Northen, Trent R
Published in Analytical chemistry (Washington) (19.11.2013)
Published in Analytical chemistry (Washington) (19.11.2013)
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Journal Article
Mass spectrometry imaging for in situ kinetic histochemistry
Louie, Katherine B, Bowen, Benjamin P, McAlhany, Stephanie, Huang, Yurong, Price, John C, Mao, Jian-hua, Hellerstein, Marc, Northen, Trent R
Published in Scientific reports (15.04.2013)
Published in Scientific reports (15.04.2013)
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Journal Article
A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology
Calhoun, Sara, Bell, Tisza Ann Szeremy, Dahlin, Lukas R, Kunde, Yuliya, LaButti, Kurt, Louie, Katherine B, Kuftin, Andrea, Treen, Daniel, Dilworth, David, Mihaltcheva, Sirma, Daum, Christopher, Bowen, Benjamin P, Northen, Trent R, Guarnieri, Michael T, Starkenburg, Shawn R, Grigoriev, Igor V
Published in Communications biology (12.03.2021)
Published in Communications biology (12.03.2021)
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Journal Article
Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium
Džunková, Mária, La Clair, James J, Tyml, Tomáš, Doud, Devin, Schulz, Frederik, Piquer-Esteban, Samuel, Porcel Sanchis, Dafne, Osborn, Andrew, Robinson, David, Louie, Katherine B, Bowen, Ben P, Bowers, Robert M, Lee, Janey, Arnau, Vicente, Díaz-Villanueva, Wladimiro, Stepanauskas, Ramunas, Gosliner, Terrence, Date, Shailesh V, Northen, Trent R, Cheng, Jan-Fang, Burkart, Michael D, Woyke, Tanja
Published in Microbiome (13.06.2023)
Published in Microbiome (13.06.2023)
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Journal Article
A standardized quantitative analysis strategy for stable isotope probing metagenomics
Vyshenska, Dariia, Sampara, Pranav, Singh, Kanwar, Tomatsu, Andy, Kauffman, W Berkeley, Nuccio, Erin E, Blazewicz, Steven J, Pett-Ridge, Jennifer, Louie, Katherine B, Varghese, Neha, Kellom, Matthew, Clum, Alicia, Riley, Robert, Roux, Simon, Eloe-Fadrosh, Emiley A, Ziels, Ryan M, Malmstrom, Rex R
Published in mSystems (28.06.2023)
Published in mSystems (28.06.2023)
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Journal Article
Widespread adenine N6-methylation of active genes in fungi
Mondo, Stephen J, Dannebaum, Richard O, Kuo, Rita C, Louie, Katherine B, Bewick, Adam J, LaButti, Kurt, Haridas, Sajeet, Kuo, Alan, Salamov, Asaf, Ahrendt, Steven R, Lau, Rebecca, Bowen, Benjamin P, Lipzen, Anna, Sullivan, William, Andreopoulos, Bill B, Clum, Alicia, Lindquist, Erika, Daum, Christopher, Northen, Trent R, Kunde-Ramamoorthy, Govindarajan, Schmitz, Robert J, Gryganskyi, Andrii, Culley, David, Magnuson, Jon, James, Timothy Y, O'Malley, Michelle A, Stajich, Jason E, Spatafora, Joseph W, Visel, Axel, Grigoriev, Igor V
Published in Nature genetics (01.06.2017)
Published in Nature genetics (01.06.2017)
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Journal Article
Anaerobic gut fungi are an untapped reservoir of natural products
Swift, Candice L, Louie, Katherine B, Bowen, Benjamin P, Olson, Heather M, Purvine, Samuel O, Salamov, Asaf, Mondo, Stephen J, Solomon, Kevin V, Wright, Aaron T, Northen, Trent R, Grigoriev, Igor V, Keller, Nancy P, O'Malley, Michelle A
Published in Proceedings of the National Academy of Sciences - PNAS (04.05.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (04.05.2021)
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Journal Article
Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls
Markel, Kasey, Novak, Vlastimil, Bowen, Benjamin P, Tian, Yang, Chen, Yi-Chun, Sirirungruang, Sasilada, Zhou, Andy, Louie, Katherine B, Northen, Trent R, Eudes, Aymerick, Scheller, Henrik V, Shih, Patrick M
Published in Plant physiology (Bethesda) (30.04.2024)
Published in Plant physiology (Bethesda) (30.04.2024)
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Journal Article
Expression of dehydroshikimate dehydratase in poplar induces transcriptional and metabolic changes in the phenylpropanoid pathway
Akyuz Turumtay, Emine, Turumtay, Halbay, Tian, Yang, Lin, Chien-Yuan, Chai, Yen Ning, Louie, Katherine B, Chen, Yan, Lipzen, Anna, Harwood, Thomas, Satish Kumar, Kavitha, Bowen, Benjamin P, Wang, Qian, Mansfield, Shawn D, Blow, Matthew J, Petzold, Christopher J, Northen, Trent R, Mortimer, Jenny C, Scheller, Henrik V, Eudes, Aymerick
Published in Journal of experimental botany (28.08.2024)
Published in Journal of experimental botany (28.08.2024)
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Journal Article
Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism
Carrell, Alyssa A, Veličković, Dušan, Lawrence, Travis J, Bowen, Benjamin P, Louie, Katherine B, Carper, Dana L, Chu, Rosalie K, Mitchell, Hugh D, Orr, Galya, Markillie, Lye Meng, Jawdy, Sara S, Grimwood, Jane, Shaw, A Jonathan, Schmutz, Jeremy, Northen, Trent R, Anderton, Christopher R, Pelletier, Dale A, Weston, David J
Published in The ISME Journal (01.04.2022)
Published in The ISME Journal (01.04.2022)
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Journal Article
Cooking shapes the structure and function of the gut microbiome
Carmody, Rachel N, Bisanz, Jordan E, Bowen, Benjamin P, Maurice, Corinne F, Lyalina, Svetlana, Louie, Katherine B, Treen, Daniel, Chadaideh, Katia S, Maini Rekdal, Vayu, Bess, Elizabeth N, Spanogiannopoulos, Peter, Ang, Qi Yan, Bauer, Kylynda C, Balon, Thomas W, Pollard, Katherine S, Northen, Trent R, Turnbaugh, Peter J
Published in Nature microbiology (01.12.2019)
Published in Nature microbiology (01.12.2019)
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Journal Article
Metabolomic Patterns of Septoria Canker Resistant and Susceptible Populus trichocarpa Genotypes 24 Hours Postinoculation
Lenz, Ryan R, Louie, Katherine B, Søndreli, Kelsey L, Galanie, Stephanie S, Chen, Jin-Gui, Muchero, Wellington, Bowen, Benjamin P, Northen, Trent R, LeBoldus, Jared M
Published in Phytopathology (01.11.2021)
Published in Phytopathology (01.11.2021)
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Journal Article