Integration of biological networks and gene expression data using Cytoscape
Ideker, Trey, Cline, Melissa S, Smoot, Michael, Cerami, Ethan, Kuchinsky, Allan, Landys, Nerius, Workman, Chris, Christmas, Rowan, Avila-Campilo, Iliana, Creech, Michael, Gross, Benjamin, Hanspers, Kristina, Isserlin, Ruth, Kelley, Ryan, Killcoyne, Sarah, Lotia, Samad, Maere, Steven, Morris, John, Ono, Keiichiro, Pavlovic, Vuk, Pico, Alexander R, Vailaya, Aditya, Wang, Peng-Liang, Adler, Annette, Conklin, Bruce R, Hood, Leroy, Kuiper, Martin, Sander, Chris, Schmulevich, Ilya, Schwikowski, Benno, Warner, Guy J, Bader, Gary D
Published in Nature protocols (01.10.2007)
Published in Nature protocols (01.10.2007)
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WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization
Kutmon, Martina, Lotia, Samad, Evelo, Chris T, Pico, Alexander R
Published in F1000 research (11.09.2014)
Published in F1000 research (11.09.2014)
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Journal Article
setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
Morris, John H, Lotia, Samad, Wu, Allan, Doncheva, Nadezhda T, Albrecht, Mario, Pico, Alexander R, Ferrin, Thomas E
Published in F1000 research (2014)
Published in F1000 research (2014)
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The Cytoscape app article collection [version 1; peer review: not peer reviewed]
Pico, Alexander R, Bader, Gary D, Demchak, Barry, Guitart Pla, Oriol, Hull, Timothy, Longabaugh, William, Lopes, Christian, Lotia, Samad, Molenaar, Piet, Montojo, Jason, Morris, John H, Ono, Keiichiro, Schwikowski, Benno, Welker, David, Ideker, Trey
Published in F1000 research (2014)
Published in F1000 research (2014)
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Journal Article
A travel guide to Cytoscape plugins
Saito, Rintaro, Smoot, Michael E, Ono, Keiichiro, Ruscheinski, Johannes, Wang, Peng-Liang, Lotia, Samad, Pico, Alexander R, Bader, Gary D, Ideker, Trey
Published in Nature methods (01.11.2012)
Published in Nature methods (01.11.2012)
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Journal Article
Cytoscape app store
Lotia, Samad, Montojo, Jason, Dong, Yue, Bader, Gary D, Pico, Alexander R
Published in Bioinformatics (15.05.2013)
Published in Bioinformatics (15.05.2013)
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Journal Article
From Scientific Discovery to Cures: Bright Stars within a Galaxy
Williams, R. Sanders, Lotia, Samad, Holloway, Alisha K., Pico, Alexander R.
Published in Cell (24.09.2015)
Published in Cell (24.09.2015)
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Journal Article
Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives
Daily, Kenneth, Ho Sui, Shannan J, Schriml, Lynn M, Dexheimer, Phillip J, Salomonis, Nathan, Schroll, Robin, Bush, Stacy, Keddache, Mehdi, Mayhew, Christopher, Lotia, Samad, Perumal, Thanneer M, Dang, Kristen, Pantano, Lorena, Pico, Alexander R, Grassman, Elke, Nordling, Diana, Hide, Winston, Hatzopoulos, Antonis K, Malik, Punam, Cancelas, Jose A, Lutzko, Carolyn, Aronow, Bruce J, Omberg, Larsson
Published in Scientific data (28.03.2017)
Published in Scientific data (28.03.2017)
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