RNA modifications in structure prediction – Status quo and future challenges
Tanzer, Andrea, Hofacker, Ivo L., Lorenz, Ronny
Published in Methods (San Diego, Calif.) (01.03.2019)
Published in Methods (San Diego, Calif.) (01.03.2019)
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Journal Article
ViennaRNA Package 2.0
Lorenz, Ronny, Bernhart, Stephan H, Höner Zu Siederdissen, Christian, Tafer, Hakim, Flamm, Christoph, Stadler, Peter F, Hofacker, Ivo L
Published in Algorithms for molecular biology (24.11.2011)
Published in Algorithms for molecular biology (24.11.2011)
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Journal Article
Predicting RNA secondary structures from sequence and probing data
Lorenz, Ronny, Wolfinger, Michael T., Tanzer, Andrea, Hofacker, Ivo L.
Published in Methods (San Diego, Calif.) (01.07.2016)
Published in Methods (San Diego, Calif.) (01.07.2016)
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Journal Article
SHAPE directed RNA folding
Lorenz, Ronny, Luntzer, Dominik, Hofacker, Ivo L, Stadler, Peter F, Wolfinger, Michael T
Published in Bioinformatics (01.01.2016)
Published in Bioinformatics (01.01.2016)
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Journal Article
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package
Yao, Hua-Ting, Lorenz, Ronny, Hofacker, Ivo L, Stadler, Peter F
Published in Algorithms for molecular biology (29.07.2023)
Published in Algorithms for molecular biology (29.07.2023)
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Journal Article
Biomedical Engineering Systems and Technologies: 14th International Joint Conference, BIOSTEC 2021, Virtual Event, February 11-13, 2021, Revised Selected Papers
Gehin, Claudine, Wacogne, Bruno, Douplik, Alexandre, Lorenz, Ronny, Bracken, Bethany, Pesquita, Cátia, Fred, Ana, Gamboa, Hugo
Year of Publication 2023
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Year of Publication 2023
eBook
Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA
Lavender, Christopher A, Lorenz, Ronny, Zhang, Ge, Tamayo, Rita, Hofacker, Ivo L, Weeks, Kevin M
Published in PLoS computational biology (01.05.2015)
Published in PLoS computational biology (01.05.2015)
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Journal Article
Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction
Flamm , Christoph, Wielach, Julia, Wolfinger, Michael T., Badelt, Stefan, Lorenz, Ronny, Hofacker, Ivo L.
Published in Frontiers in bioinformatics (11.07.2022)
Published in Frontiers in bioinformatics (11.07.2022)
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Journal Article
Folding RNA/DNA hybrid duplexes
LORENZ, Ronny, HOFACKER, Ivo L, BERNHART, Stephan H
Published in Bioinformatics (Oxford, England) (01.10.2012)
Published in Bioinformatics (Oxford, England) (01.10.2012)
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Journal Article
Animal snoRNAs and scaRNAs with exceptional structures
Marz, Manja, Gruber, Andreas R., Höner zu Siederdissen, Christian, Amman, Fabian, Badelt, Stefan, Bartschat, Sebastian, Bernhart, Stephan H., Beyer, Wolfgang, Kehr, Stephanie, Lorenz, Ronny, Tanzer, Andrea, Yusuf, Dilmurat, Tafer, Hakim, Hofacker, Ivo L., Stadler, Peter F.
Published in RNA biology (01.11.2011)
Published in RNA biology (01.11.2011)
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Journal Article
DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model
Badelt, Stefan, Lorenz, Ronny, Hofacker, Ivo L
Published in Bioinformatics (Oxford, England) (01.01.2023)
Published in Bioinformatics (Oxford, England) (01.01.2023)
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Journal Article
Modified RNAs and predictions with the ViennaRNA Package
Varenyk, Yuliia, Spicher, Thomas, Hofacker, Ivo L, Lorenz, Ronny
Published in Bioinformatics (Oxford, England) (01.11.2023)
Published in Bioinformatics (Oxford, England) (01.11.2023)
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Journal Article
Vienna RNA Websuite
Gruber, Andreas R, Lorenz, Ronny, Bernhart, Stephan H, Neuböck, Richard, Hofacker, Ivo L
Published in Nucleic acids research (01.07.2008)
Published in Nucleic acids research (01.07.2008)
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Journal Article
RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes
Entzian, Gregor, Hofacker, Ivo L, Ponty, Yann, Lorenz, Ronny, Tanzer, Andrea
Published in Bioinformatics (Oxford, England) (09.08.2021)
Published in Bioinformatics (Oxford, England) (09.08.2021)
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Journal Article
RNA folding with hard and soft constraints
Lorenz, Ronny, Hofacker, Ivo L, Stadler, Peter F
Published in Algorithms for molecular biology (23.04.2016)
Published in Algorithms for molecular biology (23.04.2016)
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Journal Article
The ViennaRNA web services
Gruber, Andreas R, Bernhart, Stephan H, Lorenz, Ronny
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2015)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2015)
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