Genetic variation in histone modifications and gene expression identifies regulatory variants in the mammary gland of cattle
Prowse-Wilkins, Claire P, Lopdell, Thomas J, Xiang, Ruidong, Vander Jagt, Christy J, Littlejohn, Mathew D, Chamberlain, Amanda J, Goddard, Michael E
Published in BMC genomics (08.12.2022)
Published in BMC genomics (08.12.2022)
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Journal Article
A new mechanism for a familiar mutation - bovine DGAT1 K232A modulates gene expression through multi-junction exon splice enhancement
Fink, Tania, Lopdell, Thomas J, Tiplady, Kathryn, Handley, Renee, Johnson, Thomas J J, Spelman, Richard J, Davis, Stephen R, Snell, Russell G, Littlejohn, Mathew D
Published in BMC genomics (26.08.2020)
Published in BMC genomics (26.08.2020)
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Journal Article
Allele-specific binding variants causing ChIP-seq peak height of histone modification are not enriched in expression QTL annotations
Ghoreishifar, Mohammad, Chamberlain, Amanda J, Xiang, Ruidong, Prowse-Wilkins, Claire P, Lopdell, Thomas J, Littlejohn, Mathew D, Pryce, Jennie E, Goddard, Michael E
Published in Genetics selection evolution (Paris) (27.06.2024)
Published in Genetics selection evolution (Paris) (27.06.2024)
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Journal Article
Comparison of the genetic characteristics of directly measured and Fourier-transform mid-infrared-predicted bovine milk fatty acids and proteins
Tiplady, Kathryn M., Lopdell, Thomas J., Sherlock, Richard G., Johnson, Thomas J.J., Spelman, Richard J., Harris, Bevin L., Davis, Stephen R., Littlejohn, Mathew D., Garrick, Dorian J.
Published in Journal of dairy science (01.12.2022)
Published in Journal of dairy science (01.12.2022)
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Journal Article
DNA and RNA-sequence based GWAS highlights membrane-transport genes as key modulators of milk lactose content
Lopdell, Thomas J, Tiplady, Kathryn, Struchalin, Maksim, Johnson, Thomas J J, Keehan, Michael, Sherlock, Ric, Couldrey, Christine, Davis, Stephen R, Snell, Russell G, Spelman, Richard J, Littlejohn, Mathew D
Published in BMC genomics (15.12.2017)
Published in BMC genomics (15.12.2017)
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Journal Article
HandyCNV: Standardized Summary, Annotation, Comparison, and Visualization of Copy Number Variant, Copy Number Variation Region, and Runs of Homozygosity
Zhou, Jinghang, Liu, Liyuan, Lopdell, Thomas J., Garrick, Dorian J., Shi, Yuangang
Published in Frontiers in genetics (17.09.2021)
Published in Frontiers in genetics (17.09.2021)
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Journal Article
A common regulatory haplotype doubles lactoferrin concentration in milk
Lopdell, Thomas J, Trevarton, Alexander J, Moody, Janelle, Prowse-Wilkins, Claire, Knowles, Sarah, Tiplady, Kathryn, Chamberlain, Amanda J, Goddard, Michael E, Spelman, Richard J, Lehnert, Klaus, Snell, Russell G, Davis, Stephen R, Littlejohn, Mathew D
Published in Genetics selection evolution (Paris) (28.03.2024)
Published in Genetics selection evolution (Paris) (28.03.2024)
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Journal Article
Sequence-based genome-wide association study of individual milk mid-infrared wavenumbers in mixed-breed dairy cattle
Tiplady, Kathryn M, Lopdell, Thomas J, Reynolds, Edwardo, Sherlock, Richard G, Keehan, Michael, Johnson, Thomas Jj, Pryce, Jennie E, Davis, Stephen R, Spelman, Richard J, Harris, Bevin L, Garrick, Dorian J, Littlejohn, Mathew D
Published in Genetics selection evolution (Paris) (20.07.2021)
Published in Genetics selection evolution (Paris) (20.07.2021)
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Journal Article
Genome-wide association analysis reveals QTL and candidate mutations involved in white spotting in cattle
Jivanji, Swati, Worth, Gemma, Lopdell, Thomas J, Yeates, Anna, Couldrey, Christine, Reynolds, Edwardo, Tiplady, Kathryn, McNaughton, Lorna, Johnson, Thomas J J, Davis, Stephen R, Harris, Bevin, Spelman, Richard, Snell, Russell G, Garrick, Dorian, Littlejohn, Mathew D
Published in Genetics selection evolution (Paris) (08.11.2019)
Published in Genetics selection evolution (Paris) (08.11.2019)
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Journal Article
Screening for phenotypic outliers identifies an unusually low concentration of a β-lactoglobulin B protein isoform in bovine milk caused by a synonymous SNP
Davis, Stephen R, Ward, Hamish E, Kelly, Van, Palmer, David, Ankersmit-Udy, Alexandra E, Lopdell, Thomas J, Berry, Sarah D, Littlejohn, Mathew D, Tiplady, Kathryn, Adams, Linda F, Carnie, Katie, Burrett, Alayna, Thomas, Natalie, Snell, Russell G, Spelman, Richard J, Lehnert, Klaus
Published in Genetics selection evolution (Paris) (16.03.2022)
Published in Genetics selection evolution (Paris) (16.03.2022)
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Journal Article
Multiple QTL underlie milk phenotypes at the CSF2RB locus
Lopdell, Thomas J, Tiplady, Kathryn, Couldrey, Christine, Johnson, Thomas J J, Keehan, Michael, Davis, Stephen R, Harris, Bevin L, Spelman, Richard J, Snell, Russell G, Littlejohn, Mathew D
Published in Genetics selection evolution (Paris) (24.01.2019)
Published in Genetics selection evolution (Paris) (24.01.2019)
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Journal Article
Non-additive association analysis using proxy phenotypes identifies novel cattle syndromes
Reynolds, Edwardo G M, Neeley, Catherine, Lopdell, Thomas J, Keehan, Michael, Dittmer, Keren, Harland, Chad S, Couldrey, Christine, Johnson, Thomas J J, Tiplady, Kathryn, Worth, Gemma, Walker, Mark, Davis, Stephen R, Sherlock, Richard G, Carnie, Katie, Harris, Bevin L, Charlier, Carole, Georges, Michel, Spelman, Richard J, Garrick, Dorian J, Littlejohn, Mathew D
Published in Nature genetics (01.07.2021)
Published in Nature genetics (01.07.2021)
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Journal Article
Web Resource
Widespread cis -regulation of RNA editing in a large mammal
Lopdell, Thomas J, Hawkins, Victoria, Couldrey, Christine, Tiplady, Kathryn, Davis, Stephen R, Harris, Bevin L, Snell, Russell G, Littlejohn, Mathew D
Published in RNA (Cambridge) (01.03.2019)
Published in RNA (Cambridge) (01.03.2019)
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Journal Article
Development of SpCas9-expressing bovine mammary epithelial cell lines
Trevarton, Alexander J., Mears, Emily R., Moody, Janelle, Lopdell, Thomas J., Chometon, Thaize Q., Taylor, John A., Wang, Carol J., Littlejohn, Mathew D., Snell, Russell G.
Published in In vitro cellular & developmental biology. Animal (01.03.2023)
Published in In vitro cellular & developmental biology. Animal (01.03.2023)
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Journal Article
Screening for phenotypic outliers identifies an unusually low concentration of a [beta]-lactoglobulin B protein isoform in bovine milk caused by a synonymous SNP
Davis, Stephen R, Ward, Hamish E, Kelly, Van, Palmer, David, Ankersmit-Udy, Alexandra E, Lopdell, Thomas J, Berry, Sarah D, Littlejohn, Mathew D, Tiplady, Kathryn, Adams, Linda F, Carnie, Katie, Burrett, Alayna, Thomas, Natalie, Snell, Russell G, Spelman, Richard J, Lehnert, Klaus
Published in Genetics selection evolution (Paris) (16.03.2022)
Published in Genetics selection evolution (Paris) (16.03.2022)
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Journal Article
A new mechanism for a familiar mutation - bovine DGAT1 K232A modulates gene expression through multi-junction exon splice enhancement
Fink, Tania, Lopdell, Thomas J, Tiplady, Kathryn, Handley, Renee, Johnson, Thomas Jj, Spelman, Richard J, Davis, Stephen R, Snell, Russell G, Littlejohn, Mathew D
Published in bioRxiv (05.02.2020)
Published in bioRxiv (05.02.2020)
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Paper
Non-additive QTL mapping of lactation traits in 124,000 sequence-imputed cattle reveals novel recessive loci
Reynolds, Edwardo Gm, Lopdell, Thomas J, Wang, Yu, Tiplady, Kathryn, Harland, Chad, Johnson, Thomas, Neeley, Catherine, Carnie, Katie, Sherlock, Richard, Couldrey, Christine, Davis, Stephen, Harris, Bevin, Spelman, Richard, Garrick, Dorian, Littlejohn, Mathew
Published in bioRxiv (01.09.2021)
Published in bioRxiv (01.09.2021)
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Paper
Multiple QTL underlie milk phenotypes at the CSF2RB locus
Lopdell, Thomas J, Tiplady, Kathryn, Couldrey, Christine, Johnson, Thomas Jj, Keehan, Michael, Davis, Stephen R, Harris, Bevin L, Spelman, Richard J, Snell, Russell G, Littlejohn, Mathew D
Published in bioRxiv (12.09.2018)
Published in bioRxiv (12.09.2018)
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Paper