Global and targeted approaches to single-cell transcriptome characterization
Kolodziejczyk, Aleksandra A, Lönnberg, Tapio
Published in Briefings in functional genomics (01.07.2018)
Published in Briefings in functional genomics (01.07.2018)
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Journal Article
Cell type markers indicate distinct contributions of decidual stromal cells and natural killer cells in preeclampsia
Rytkönen, Kalle T, Adossa, Nigatu, Mahmoudian, Mehrad, Lönnberg, Tapio, Poutanen, Matti, Elo, Laura L
Published in Reproduction (Cambridge, England) (01.11.2022)
Published in Reproduction (Cambridge, England) (01.11.2022)
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Journal Article
Human adipose tissue-derived stem cell paracrine networks vary according metabolic risk and after TNFα-induced death: An analysis at the single-cell level
Oliva-Olivera, Wilfredo, Castellano-Castillo, Daniel, von Meyenn, Ferdinand, Cardona, Fernando, Lönnberg, Tapio, Tinahones, Francisco J.
Published in Metabolism, clinical and experimental (01.03.2021)
Published in Metabolism, clinical and experimental (01.03.2021)
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Journal Article
A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications
Haque, Ashraful, Engel, Jessica, Teichmann, Sarah A, Lönnberg, Tapio
Published in Genome medicine (18.08.2017)
Published in Genome medicine (18.08.2017)
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Journal Article
From a gene-centric to whole-proteome view of differentiation of T helper cell subsets
Lönnberg, Tapio, Chen, Zhi, Lahesmaa, Riitta
Published in Briefings in functional genomics (01.11.2013)
Published in Briefings in functional genomics (01.11.2013)
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Journal Article
Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial Cell Heterogeneity and Mechanisms of Homing for Neutrophils
Takeda, Akira, Hollmén, Maija, Dermadi, Denis, Pan, Junliang, Brulois, Kevin Francis, Kaukonen, Riina, Lönnberg, Tapio, Boström, Pia, Koskivuo, Ilkka, Irjala, Heikki, Miyasaka, Masayuki, Salmi, Marko, Butcher, Eugene C., Jalkanen, Sirpa
Published in Immunity (Cambridge, Mass.) (17.09.2019)
Published in Immunity (Cambridge, Mass.) (17.09.2019)
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Journal Article
Microanatomy of the Human Atherosclerotic Plaque by Single-Cell Transcriptomics
Depuydt, Marie A.C, Prange, Koen H.M, Slenders, Lotte, Örd, Tiit, Elbersen, Danny, Boltjes, Arjan, de Jager, Saskia C.A, Asselbergs, Folkert W, de Borst, Gert J, Aavik, Einari, Lönnberg, Tapio, Lutgens, Esther, Glass, Christopher K, den Ruijter, Hester M, Kaikkonen, Minna U, Bot, Ilze, Slütter, Bram, van der Laan, Sander W, Yla-Herttuala, Seppo, Mokry, Michal, Kuiper, Johan, de Winther, Menno P.J, Pasterkamp, Gerard
Published in Circulation research (06.11.2020)
Published in Circulation research (06.11.2020)
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Journal Article
T cell fate and clonality inference from single-cell transcriptomes
Stubbington, Michael J T, Lönnberg, Tapio, Proserpio, Valentina, Clare, Simon, Speak, Anneliese O, Dougan, Gordon, Teichmann, Sarah A
Published in Nature methods (01.04.2016)
Published in Nature methods (01.04.2016)
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Journal Article
Single-cell characterization of leukemic and non-leukemic immune repertoires in CD8 + T-cell large granular lymphocytic leukemia
Huuhtanen, Jani, Bhattacharya, Dipabarna, Lönnberg, Tapio, Kankainen, Matti, Kerr, Cassandra, Theodoropoulos, Jason, Rajala, Hanna, Gurnari, Carmelo, Kasanen, Tiina, Braun, Till, Teramo, Antonella, Zambello, Renato, Herling, Marco, Ishida, Fumihiro, Kawakami, Toru, Salmi, Marko, Loughran, Thomas, Maciejewski, Jaroslaw P, Lähdesmäki, Harri, Kelkka, Tiina, Mustjoki, Satu
Published in Nature communications (11.04.2022)
Published in Nature communications (11.04.2022)
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Journal Article
Single-cell characterization of anti-LAG-3 and anti-PD-1 combination treatment in patients with melanoma
Huuhtanen, Jani, Kasanen, Henna, Peltola, Katriina, Lönnberg, Tapio, Glumoff, Virpi, Brück, Oscar, Dufva, Olli, Peltonen, Karita, Vikkula, Johanna, Jokinen, Emmi, Ilander, Mette, Lee, Moon Hee, Mäkelä, Siru, Nyakas, Marta, Li, Bin, Hernberg, Micaela, Bono, Petri, Lähdesmäki, Harri, Kreutzman, Anna, Mustjoki, Satu
Published in The Journal of clinical investigation (15.03.2023)
Published in The Journal of clinical investigation (15.03.2023)
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Journal Article
Evolution and modulation of antigen-specific T cell responses in melanoma patients
Huuhtanen, Jani, Chen, Liang, Jokinen, Emmi, Kasanen, Henna, Lönnberg, Tapio, Kreutzman, Anna, Peltola, Katriina, Hernberg, Micaela, Wang, Chunlin, Yee, Cassian, Lähdesmäki, Harri, Davis, Mark M, Mustjoki, Satu
Published in Nature communications (11.10.2022)
Published in Nature communications (11.10.2022)
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Journal Article
Somatic mTOR mutation in clonally expanded T lymphocytes associated with chronic graft versus host disease
Kim, Daehong, Park, Giljun, Huuhtanen, Jani, Lundgren, Sofie, Khajuria, Rajiv K, Hurtado, Ana M, Muñoz-Calleja, Cecilia, Cardeñoso, Laura, Gómez-García de Soria, Valle, Chen-Liang, Tzu Hua, Eldfors, Samuli, Ellonen, Pekka, Hannula, Sari, Kankainen, Matti, Bruck, Oscar, Kreutzman, Anna, Salmenniemi, Urpu, Lönnberg, Tapio, Jerez, Andrés, Itälä-Remes, Maija, Myllymäki, Mikko, Keränen, Mikko A I, Mustjoki, Satu
Published in Nature communications (07.05.2020)
Published in Nature communications (07.05.2020)
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Journal Article
Single-Cell Epigenomics and Functional Fine-Mapping of Atherosclerosis GWAS Loci
Örd, Tiit, Õunap, Kadri, Stolze, Lindsey K., Aherrahrou, Redouane, Nurminen, Valtteri, Toropainen, Anu, Selvarajan, Ilakya, Lönnberg, Tapio, Aavik, Einari, Ylä-Herttuala, Seppo, Civelek, Mete, Romanoski, Casey E., Kaikkonen, Minna U.
Published in Circulation research (09.07.2021)
Published in Circulation research (09.07.2021)
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Journal Article
Transcriptome dynamics of CD4 + T cells during malaria maps gradual transit from effector to memory
Soon, Megan S F, Lee, Hyun Jae, Engel, Jessica A, Straube, Jasmin, Thomas, Bryce S, Pernold, Clara P S, Clarke, Lachlan S, Laohamonthonkul, Pawat, Haldar, Rohit N, Williams, Cameron G, Lansink, Lianne I M, Moreira, Marcela L, Bramhall, Michael, Koufariotis, Lambros T, Wood, Scott, Chen, Xi, James, Kylie R, Lönnberg, Tapio, Lane, Steven W, Belz, Gabrielle T, Engwerda, Christian R, Khoury, David S, Davenport, Miles P, Svensson, Valentine, Teichmann, Sarah A, Haque, Ashraful
Published in Nature immunology (01.12.2020)
Published in Nature immunology (01.12.2020)
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Journal Article
Single-cell RNA-sequencing resolves self-antigen expression during mTEC development
Miragaia, Ricardo J, Zhang, Xiuwei, Gomes, Tomás, Svensson, Valentine, Ilicic, Tomislav, Henriksson, Johan, Kar, Gozde, Lönnberg, Tapio
Published in Scientific reports (12.01.2018)
Published in Scientific reports (12.01.2018)
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Journal Article
PIM kinases regulate early human Th17 cell differentiation
Buchacher, Tanja, Shetty, Ankitha, Koskela, Saara A., Smolander, Johannes, Kaukonen, Riina, Sousa, António G.G., Junttila, Sini, Laiho, Asta, Rundquist, Olof, Lönnberg, Tapio, Marson, Alexander, Rasool, Omid, Elo, Laura L., Lahesmaa, Riitta
Published in Cell reports (Cambridge) (26.12.2023)
Published in Cell reports (Cambridge) (26.12.2023)
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Journal Article
Early Detection of Peripheral Blood Cell Signature in Children Developing β-Cell Autoimmunity at a Young Age
Kallionpää, Henna, Somani, Juhi, Tuomela, Soile, Ullah, Ubaid, de Albuquerque, Rafael, Lönnberg, Tapio, Komsi, Elina, Siljander, Heli, Honkanen, Jarno, Härkönen, Taina, Peet, Aleksandr, Tillmann, Vallo, Chandra, Vikash, Anagandula, Mahesh Kumar, Frisk, Gun, Otonkoski, Timo, Rasool, Omid, Lund, Riikka, Lähdesmäki, Harri, Knip, Mikael, Lahesmaa, Riitta
Published in Diabetes (New York, N.Y.) (01.10.2019)
Published in Diabetes (New York, N.Y.) (01.10.2019)
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