Machine Learning of Single-Cell Transcriptome Highly Identifies mRNA Signature by Comparing F-Score Selection with DGE Analysis
Liang, Pengfei, Yang, Wuritu, Chen, Xing, Long, Chunshen, Zheng, Lei, Li, Hanshuang, Zuo, Yongchun
Published in Molecular therapy. Nucleic acids (05.06.2020)
Published in Molecular therapy. Nucleic acids (05.06.2020)
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EmExplorer: a database for exploring time activation of gene expression in mammalian embryos
Hu, Bosu, Zheng, Lei, Long, Chunshen, Song, Mingmin, Li, Tao, Yang, Lei, Zuo, Yongchun
Published in Open biology (01.06.2019)
Published in Open biology (01.06.2019)
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Journal Article
Deciphering the decisive factors driving fate bifurcations in somatic cell reprogramming
Long, Chunshen, Li, Hanshuang, Liang, Pengfei, Chao, Lemuge, Hong, Yan, Zhang, Junping, Xi, Qilemuge, Zuo, Yongchun
Published in Molecular therapy. Nucleic acids (12.12.2023)
Published in Molecular therapy. Nucleic acids (12.12.2023)
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Journal Article
An increment of diversity method for cell state trajectory inference of time-series scRNA-seq data
Hong, Yan, Li, Hanshuang, Long, Chunshen, Liang, Pengfei, Zhou, Jian, Zuo, Yongchun
Published in Fundamental research (Beijing) (01.07.2024)
Published in Fundamental research (Beijing) (01.07.2024)
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The spatial binding model of the pioneer factor Oct4 with its target genes during cell reprogramming
Li, Hanshuang, Ta, Na, Long, Chunshen, Zhang, Qiutang, Li, Siyu, liu, Shuai, Yang, Lei, Zuo, Yongchun
Published in Computational and structural biotechnology journal (01.01.2019)
Published in Computational and structural biotechnology journal (01.01.2019)
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WGBS combined with RNA-seq analysis revealed that Dnmt1 affects the methylation modification and gene expression changes during mouse oocyte vitrification
Ma, Yuzhen, Long, Chunshen, Liu, Gang, Bai, Hongmei, Ma, Lirong, Bai, Taji, Zuo, Yongchun, Li, Shubin
Published in Theriogenology (01.01.2022)
Published in Theriogenology (01.01.2022)
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EmAtlas: a comprehensive atlas for exploring spatiotemporal activation in mammalian embryogenesis
Zheng, Lei, Liang, Pengfei, Long, Chunshen, Li, Haicheng, Li, Hanshuang, Liang, Yuchao, He, Xiang, Xi, Qilemuge, Xing, Yongqiang, Zuo, Yongchun
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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SpaNCMG: improving spatial domains identification of spatial transcriptomics using neighborhood-complementary mixed-view graph convolutional network
Si, Zhihao, Li, Hanshuang, Shang, Wenjing, Zhao, Yanan, Kong, Lingjiao, Long, Chunshen, Zuo, Yongchun, Feng, Zhenxing
Published in Briefings in bioinformatics (23.05.2024)
Published in Briefings in bioinformatics (23.05.2024)
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Competitive binding of TET1 and DNMT3A/B cooperates the DNA methylation pattern in human embryonic stem cells
Chao, Lemuge, Yang, Siqi, Li, Hanshuang, Long, Chunshen, Xi, Qilemuge, Zuo, Yongchun
Published in Biochimica et biophysica acta. Gene regulatory mechanisms (01.10.2022)
Published in Biochimica et biophysica acta. Gene regulatory mechanisms (01.10.2022)
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eHSCPr discriminating the cell identity involved in endothelial to hematopoietic transition
Wang, Hao, Liang, Pengfei, Zheng, Lei, Long, ChunShen, Li, HanShuang, Zuo, Yongchun
Published in Bioinformatics (Oxford, England) (09.08.2021)
Published in Bioinformatics (Oxford, England) (09.08.2021)
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Chromatin region binning of gene expression for improving embryo cell subtype identification
Liang, Pengfei, Li, Hanshuang, Long, Chunshen, Liu, Mingzhu, Zhou, Jian, Zuo, Yongchun
Published in Computers in biology and medicine (01.03.2024)
Published in Computers in biology and medicine (01.03.2024)
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Downregulation of the expression of subgenomic chromosome A7 genes promotes plant height in resynthesized allopolyploid Brassica napus
Zhao, Kanglu, Dong, Jing, Xu, Junxiong, Bai, Yanbo, Yin, Yuhe, Long, Chunshen, Wu, Lei, Lin, Tuanrong, Fan, Longqiu, Wang, Yufeng, Edger, Patrick P., Xiong, Zhiyong
Published in Theoretical and applied genetics (01.01.2024)
Published in Theoretical and applied genetics (01.01.2024)
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HelPredictor models single-cell transcriptome to predict human embryo lineage allocation
Liang, Pengfei, Zheng, Lei, Long, Chunshen, Yang, Wuritu, Yang, Lei, Zuo, Yongchun
Published in Briefings in bioinformatics (05.11.2021)
Published in Briefings in bioinformatics (05.11.2021)
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Fatty acid metabolism as an indicator for the maternal–to–zygotic transition in porcine IVF embryos revealed by RNA sequencing
Xiang, Jinzhu, Xing, Ying, Long, Chunshen, Hou, Dongxia, Liu, Fang, Zhang, Yuanyuan, Lu, Zhenyu, Wang, Jing, Zuo, Yongchun, Li, Xueling
Published in Theriogenology (15.07.2020)
Published in Theriogenology (15.07.2020)
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Reprogramming barriers in bovine cells nuclear transfer revealed by single‐cell RNA‐seq analysis
Zhao, Lixia, Long, Chunshen, Zhao, Gaoping, Su, Jie, Ren, Jie, Sun, Wei, Wang, Zixin, Zhang, Jia, Liu, Moning, Hao, Chunxia, Li, Hanshuang, Cao, Guifang, Bao, Siqin, Zuo, Yongchun, Li, Xihe
Published in Journal of cellular and molecular medicine (01.09.2022)
Published in Journal of cellular and molecular medicine (01.09.2022)
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