PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information
Lock, Antonia, Rutherford, Kim, Harris, Midori A, Hayles, Jacqueline, Oliver, Stephen G, Bähler, Jürg, Wood, Valerie
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
Fission stories: using PomBase to understand Schizosaccharomyces pombe biology
Harris, Midori A, Rutherford, Kim M, Hayles, Jacqueline, Lock, Antonia, Bähler, Jürg, Oliver, Stephen G, Mata, Juan, Wood, Valerie
Published in Genetics (Austin) (04.04.2022)
Published in Genetics (Austin) (04.04.2022)
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Journal Article
PomBase: The Scientific Resource for Fission Yeast
Lock, Antonia, Rutherford, Kim, Harris, Midori A, Wood, Valerie
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2018)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2018)
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Journal Article
Hidden in plain sight: what remains to be discovered in the eukaryotic proteome?
Wood, Valerie, Lock, Antonia, Harris, Midori A, Rutherford, Kim, Bähler, Jürg, Oliver, Stephen G
Published in Open biology (01.02.2019)
Published in Open biology (01.02.2019)
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Journal Article
FYPO: the fission yeast phenotype ontology
Harris, Midori A, Lock, Antonia, Bähler, Jürg, Oliver, Stephen G, Wood, Valerie
Published in Bioinformatics (01.07.2013)
Published in Bioinformatics (01.07.2013)
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Journal Article
One motif to bind them: A small-XXX-small motif affects transmembrane domain 1 oligomerization, function, localization, and cross-talk between two yeast GPCRs
Lock, Antonia, Forfar, Rachel, Weston, Cathryn, Bowsher, Leo, Upton, Graham J.G., Reynolds, Christopher A., Ladds, Graham, Dixon, Ann M.
Published in Biochimica et biophysica acta (01.12.2014)
Published in Biochimica et biophysica acta (01.12.2014)
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Journal Article
Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns
Wood, Valerie, Carbon, Seth, Harris, Midori A, Lock, Antonia, Engel, Stacia R, Hill, David P, Van Auken, Kimberly, Attrill, Helen, Feuermann, Marc, Gaudet, Pascale, Lovering, Ruth C, Poux, Sylvain, Rutherford, Kim M, Mungall, Christopher J
Published in Open biology (01.09.2020)
Published in Open biology (01.09.2020)
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Journal Article
PomBase 2015: updates to the fission yeast database
McDowall, Mark D., Harris, Midori A., Lock, Antonia, Rutherford, Kim, Staines, Daniel M., Bähler, Jürg, Kersey, Paul J., Oliver, Stephen G., Wood, Valerie
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
UniProt: the Universal Protein Knowledgebase in 2023
Bateman, Alex, Martin, Maria-Jesus, Magrane, Michele, Ahmad, Shadab, Alpi, Emanuele, Bowler-Barnett, Emily H, Britto, Ramona, Bye-A-Jee, Hema, Denny, Paul, Dogan, Tunca, Ebenezer, ThankGod, Fan, Jun, Garmiri, Penelope, Hatton-Ellis, Emma, Hussein, Abdulrahman, Ignatchenko, Alexandr, Insana, Giuseppe, Ishtiaq, Rizwan, Joshi, Vishal, Lock, Antonia, Luciani, Aurelien, Luo, Jie, MacDougall, Alistair, Madeira, Fabio, Mishra, Alok, Nightingale, Andrew, Pundir, Sangya, Qi, Guoying, Raj, Shriya, Raposo, Pedro, Rice, Daniel L, Saidi, Rabie, Santos, Rafael, Speretta, Elena, Stephenson, James, Totoo, Prabhat, Turner, Edward, Tyagi, Nidhi, Vasudev, Preethi, Warner, Kate, Watkins, Xavier, Zaru, Rossana, Zellner, Hermann, Bridge, Alan J, Aimo, Lucila, Argoud-Puy, Ghislaine, Auchincloss, Andrea H, Axelsen, Kristian B, Bansal, Parit, Baratin, Delphine, Batista Neto, Teresa M, Blatter, Marie-Claude, Bolleman, Jerven T, Boutet, Emmanuel, Breuza, Lionel, Gil, Blanca Cabrera, Casals-Casas, Cristina, Echioukh, Kamal Chikh, Cuche, Beatrice, de Castro, Edouard, Estreicher, Anne, Famiglietti, Maria L, Feuermann, Marc, Gasteiger, Elisabeth, Gehant, Sebastien, Gerritsen, Vivienne, Gruaz, Nadine, Hulo, Chantal, Hyka-Nouspikel, Nevila, Jungo, Florence, Kerhornou, Arnaud, Le Mercier, Philippe, Lieberherr, Damien, Masson, Patrick, Muthukrishnan, Venkatesh, Paesano, Salvo, Pedruzzi, Ivo, Pilbout, Sandrine, Poux, Sylvain, Pozzato, Monica, Pruess, Manuela, Redaschi, Nicole, Rivoire, Catherine, Sigrist, Christian J A, Sonesson, Karin, Sundaram, Shyamala, Wu, Cathy H, Arighi, Cecilia N, Arminski, Leslie, Chen, Chuming, Chen, Yongxing, Huang, Hongzhan, Laiho, Kati, McGarvey, Peter, Natale, Darren A, Ross, Karen, Vinayaka, C R, Wang, Qinghua, Wang, Yuqi, Zhang, Jian
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Journal Article
UniProt: the universal protein knowledgebase in 2021
Martin, Maria-Jesus, Orchard, Sandra, Magrane, Michele, Agivetova, Rahat, Bowler-Barnett, Emily H, Britto, Ramona, Bursteinas, Borisas, Bye-A-Jee, Hema, Coetzee, Ray, Cukura, Austra, Da Silva, Alan, Denny, Paul, Dogan, Tunca, Fan, Jun, Castro, Leyla Garcia, Garmiri, Penelope, Georghiou, George, Hatton-Ellis, Emma, Hussein, Abdulrahman, Ignatchenko, Alexandr, Insana, Giuseppe, Ishtiaq, Rizwan, Joshi, Vishal, Jyothi, Dushyanth, Lock, Antonia, Lopez, Rodrigo, Luciani, Aurelien, MacDougall, Alistair, Madeira, Fabio, Menchi, Manuela, Mishra, Alok, Moulang, Katie, Nightingale, Andrew, Oliveira, Carla Susana, Pundir, Sangya, Qi, Guoying, Raj, Shriya, Lopez, Milagros Rodriguez, Sampson, Joseph, Speretta, Elena, Turner, Edward, Vasudev, Preethi, Volynkin, Vladimir, Warner, Kate, Watkins, Xavier, Zaru, Rossana, Zellner, Hermann, Bridge, Alan, Poux, Sylvain, Redaschi, Nicole, Aimo, Lucila, Auchincloss, Andrea, Bansal, Parit, Baratin, Delphine, Bolleman, Jerven, Boutet, Emmanuel, Breuza, Lionel, Casals-Casas, Cristina, de Castro, Edouard, Coudert, Elisabeth, Cuche, Beatrice, Doche, Mikael, Dornevil, Dolnide, Estreicher, Anne, Famiglietti, Maria Livia, Gasteiger, Elisabeth, Gehant, Sebastien, Gerritsen, Vivienne, Gos, Arnaud, Hulo, Chantal, Jungo, Florence, Keller, Guillaume, Kerhornou, Arnaud, Lara, Vicente, Le Mercier, Philippe, Lieberherr, Damien, Martin, Xavier, Masson, Patrick, Neto, Teresa Batista, Paesano, Salvo, Pedruzzi, Ivo, Pozzato, Monica, Pruess, Manuela, Stutz, Andre, Sundaram, Shyamala, Tognolli, Michael, Verbregue, Laure, Arighi, Cecilia N, Chen, Yongxing, Huang, Hongzhan, Laiho, Kati, McGarvey, Peter, Natale, Darren A, Ross, Karen, Vinayaka, C R, Wang, Qinghua, Wang, Yuqi, Zhang, Jian, Ruch, Patrick, Teodoro, Douglas
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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Journal Article
Web Resource
The Gene Ontology knowledgebase in 2023
Aleksander, Suzi A, Balhoff, James, Carbon, Seth, Cherry, J Michael, Drabkin, Harold J, Ebert, Dustin, Harris, Nomi L, Moxon, Sierra, Mungall, Christopher J, Sternberg, Paul W, Thomas, Paul D, Quaglia, Federica, Giglio, Michelle, Antonazzo, Giulia, Attrill, Helen, dos Santos, Gil, Tabone, Christopher J, Zhou, Pinglei, Ahmed, Saadullah H, Asanitthong, Praoparn, Erdol, Meltem N, Gage, Matthew C, Ali Kadhum, Mohamed, Li, Kan Yan Chloe, Michalak, Aleksandra, Pritazahra, Armalya, Saverimuttu, Shirin C C, Su, Renzhi, Thurlow, Kate E, Lovering, Ruth C, Logie, Colin, Oliferenko, Snezhana, Blake, Judith, Corbani, Lori, Ni, Li, Sitnikov, Dmitry, Smith, Cynthia, Seager, James, Cooper, Laurel, Jaiswal, Pankaj, Naithani, Sushma, Lera-Ramirez, Manuel, Rutherford, Kim, Wood, Valerie, De Pons, Jeffrey L, Dwinell, Melinda R, Hayman, G Thomas, Kwitek, Anne E, Laulederkind, Stanley J F, Tutaj, Marek A, Vedi, Mahima, Wang, Shur-Jen, D’Eustachio, Peter, Axelsen, Kristian, Aleksander, Suzi A, Engel, Stacia R, Karra, Kalpana, Miyasato, Stuart R, Nash, Robert S, Weng, Shuai, Wong, Edith D, Bakker, Erika, Berardini, Tanya Z, Reiser, Leonore, Auchincloss, Andrea, Argoud-Puy, Ghislaine, Blatter, Marie-Claude, Boutet, Emmanuel, Breuza, Lionel, Casals-Casas, Cristina, Gruaz-Gumowski, Nadine, Hulo, Chantal, Jungo, Florence, Le Mercier, Philippe, Masson, Patrick, Pedruzzi, Ivo, Pourcel, Lucille, Poux, Sylvain, Rivoire, Catherine, Sundaram, Shyamala, Bowler-Barnett, Emily, Denny, Paul, Ignatchenko, Alexandr, Lock, Antonia, Magrane, Michele, Martin, Maria J, Raposo, Pedro, Speretta, Elena, Tyagi, Nidhi, Warner, Kate, Zaru, Rossana, Diehl, Alexander D, Lee, Raymond, Chan, Juancarlos, Zarowiecki, Magdalena, Fisher, Malcolm, Ponferrada, Virgilio, Zorn, Aaron, Ramachandran, Sridhar, Ruzicka, Leyla
Published in Genetics (Austin) (04.05.2023)
Published in Genetics (Austin) (04.05.2023)
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Journal Article
The Gene Ontology resource: enriching a GOld mine
Carbon, Seth, Good, Benjamin M, Harris, Nomi L, Basu, Siddartha, Chisholm, Rex L, Dodson, Robert J, Hartline, Eric, Thomas, Paul D, Ebert, Dustin, Muruganujan, Anushya, Huang, Xiaosong, LaBonte, Sandra A, Siegele, Deborah A, Antonazzo, Giulia, Attrill, Helen, Garapati, Phani, Marygold, Steven J, Strelets, Victor B, Garmiri, Penelope, Acencio, Marcio L, Kuiper, Martin, Saverimuttu, Shirin C C, Pinheiro, Sandra M, Gunn, Heather, Thurlow, Katherine E, Nadendla, Suvarna, Jackson, Rebecca, Paneerselvam, Kalpana, Perfetto, Livia, Porras, Pablo, Orchard, Sandra, Shrivastava, Anjali, Finn, Robert Daniel, Rawlings, Neil David, Richardson, Lorna, Blake, Judith A, Christie, Karen R, Hill, David P, Sitnikov, Dmitry M, Harris, Midori A, Wood, Valerie, Bähler, Jürg, De Pons, Jeffery L, Dwinell, Melinda R, Kaldunski, Mary L, Kwitek, Anne E, Laulederkind, Stanley J F, Plasterer, Cody, Vedi, Mahima, D’Eustachio, Peter, Matthews, Lisa, Alexander, Michael J, Engel, Stacia R, Gondwe, Felix, Karra, Kalpana, Miyasato, Stuart R, Nash, Robert S, Simison, Matt, Skrzypek, Marek S, Weng, Shuai, Reiser, Leonore, Huala, Eva, Argoud-Puy, Ghislaine, Blatter, Marie-Claude, Boutet, Emmanuel, Bowler, Emily, Bridge, Alan, Britto, Ramona, Bye-A-Jee, Hema, Casas, Cristina Casals, Denny, Paul, Famiglietti, Maria Livia, Georghiou, George, Gos, Arnaud, Hulo, Chantal, Ignatchenko, Alexandr, Jungo, Florence, Lieberherr, Damien, Lock, Antonia, Natale, Darren A, Hyka-Nouspikel, Nevila, Pedruzzi, Ivo, Pourcel, Lucille, Poux, Sylvain, Warner, Kate, Zaru, Rossana, Wu, Cathy H, Diehl, Alexander D, Grove, Christian, Lee, Raymond Y N, Muller, Hans-Michael, Raciti, Daniela, Van Auken, Kimberly, Sternberg, Paul W, Berriman, Matthew, Howe, Kevin, Gao, Sibyl, Wright, Adam, Stein, Lincoln, Toro, Sabrina
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Journal Article
Annotation of biologically relevant ligands in UniProtKB using ChEBI
Coudert, Elisabeth, Gehant, Sebastien, de Castro, Edouard, Pozzato, Monica, Baratin, Delphine, Neto, Teresa, Sigrist, Christian J A, Redaschi, Nicole, Bridge, Alan
Published in Bioinformatics (Oxford, England) (01.01.2023)
Published in Bioinformatics (Oxford, England) (01.01.2023)
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Journal Article
Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
Lock, Antonia, Harris, Midori A, Rutherford, Kim, Hayles, Jacqueline, Wood, Valerie
Published in Database : the journal of biological databases and curation (2020)
Published in Database : the journal of biological databases and curation (2020)
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Journal Article
PomBase 2015: updates to the fission yeast database
McDowall, Mark D, Harris, Midori A, Lock, Antonia, Rutherford, Kim, Staines, Daniel M, Bähler, Jürg, Kersey, Paul J, Oliver, Stephen G, Wood, Valerie
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase
MacDougall, Alistair, Volynkin, Vladimir, Saidi, Rabie, Poggioli, Diego, Zellner, Hermann, Hatton-Ellis, Emma, Joshi, Vishal, O’Donovan, Claire, Orchard, Sandra, Auchincloss, Andrea H, Baratin, Delphine, Bolleman, Jerven, Coudert, Elisabeth, de Castro, Edouard, Hulo, Chantal, Masson, Patrick, Pedruzzi, Ivo, Rivoire, Catherine, Arighi, Cecilia, Wang, Qinghua, Chen, Chuming, Huang, Hongzhan, Garavelli, John, Vinayaka, C R, Yeh, Lai-Su, Natale, Darren A, Laiho, Kati, Martin, Maria-Jesus, Renaux, Alexandre, Pichler, Klemens
Published in Bioinformatics (01.11.2020)
Published in Bioinformatics (01.11.2020)
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Journal Article
Model organism databases: essential resources that need the support of both funders and users
Oliver, Stephen G, Lock, Antonia, Harris, Midori A, Nurse, Paul, Wood, Valerie
Published in BMC biology (22.06.2016)
Published in BMC biology (22.06.2016)
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Journal Article
Canto: an online tool for community literature curation
Rutherford, Kim M, Harris, Midori A, Lock, Antonia, Oliver, Stephen G, Wood, Valerie
Published in Bioinformatics (Oxford, England) (15.06.2014)
Published in Bioinformatics (Oxford, England) (15.06.2014)
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Journal Article
A method for increasing expressivity of Gene Ontology annotations using a compositional approach
Huntley, Rachael P, Harris, Midori A, Alam-Faruque, Yasmin, Blake, Judith A, Carbon, Seth, Dietze, Heiko, Dimmer, Emily C, Foulger, Rebecca E, Hill, David P, Khodiyar, Varsha K, Lock, Antonia, Lomax, Jane, Lovering, Ruth C, Mutowo-Meullenet, Prudence, Sawford, Tony, Van Auken, Kimberly, Wood, Valerie, Mungall, Christopher J
Published in BMC bioinformatics (21.05.2014)
Published in BMC bioinformatics (21.05.2014)
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Journal Article
Perspectives on tracking data reuse across biodata resources
Ross, Karen E, Bastian, Frederic B, Buys, Matt, Cook, Charles E, D'Eustachio, Peter, Harrison, Melissa, Hermjakob, Henning, Li, Donghui, Lord, Phillip, Natale, Darren A, Peters, Bjoern, Sternberg, Paul W, Su, Andrew I, Thakur, Matthew, Thomas, Paul D, Bateman, Alex
Published in Bioinformatics advances (2024)
Published in Bioinformatics advances (2024)
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Journal Article