Prevalence of transcription promoters within archaeal operons and coding sequences
Reiss, David J, Koide, Tie, Baliga, Nitin S, Peterson, Amelia, Pratap, Abhishek, Bare, J Christopher, Pan, Min, Van, Phu T, Schmid, Amy K, Marzolf, Bruz, Deutsch, Eric W, Pang, Wyming Lee, Martin, Dan, Facciotti, Marc T, Lo, Fang-Yin
Published in Molecular systems biology (16.06.2009)
Published in Molecular systems biology (16.06.2009)
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Journal Article
Evolution of context dependent regulation by expansion of feast/famine regulatory proteins
Plaisier, Christopher L, Lo, Fang-Yin, Ashworth, Justin, Brooks, Aaron N, Beer, Karlyn D, Kaur, Amardeep, Pan, Min, Reiss, David J, Facciotti, Marc T, Baliga, Nitin S
Published in BMC systems biology (14.11.2014)
Published in BMC systems biology (14.11.2014)
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Journal Article
A multigene mutation classification of 468 colorectal cancers reveals a prognostic role for APC
Schell, Michael J., Yang, Mingli, Teer, Jamie K., Lo, Fang Yin, Madan, Anup, Coppola, Domenico, Monteiro, Alvaro N. A., Nebozhyn, Michael V., Yue, Binglin, Loboda, Andrey, Bien-Willner, Gabriel A., Greenawalt, Danielle M., Yeatman, Timothy J.
Published in Nature communications (15.06.2016)
Published in Nature communications (15.06.2016)
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Journal Article
Duplex sequencing identifies genomic features that determine susceptibility to benzo(a)pyrene-induced in vivo mutations
LeBlanc, Danielle P M, Meier, Matthew, Lo, Fang Yin, Schmidt, Elizabeth, Valentine, 3rd, Charles, Williams, Andrew, Salk, Jesse J, Yauk, Carole L, Marchetti, Francesco
Published in BMC genomics (28.07.2022)
Published in BMC genomics (28.07.2022)
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Journal Article
Frequency and spectrum of mutations in human sperm measured using duplex sequencing correlate with trio-based de novo mutation analyses
Axelsson, Jonatan, LeBlanc, Danielle, Shojaeisaadi, Habiballah, Meier, Matthew J, Fitzgerald, Devon M., Nachmanson, Daniela, Carlson, Jedidiah, Golubeva, Alexandra, Higgins, Jake, Smith, Thomas, Lo, Fang Yin, Pilsner, Richard, Williams, Andrew, Salk, Jesse, Marchetti, Francesco, Yauk, Carole
Published in Scientific reports (08.10.2024)
Published in Scientific reports (08.10.2024)
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Journal Article
metaXCMS: Second-Order Analysis of Untargeted Metabolomics Data
Tautenhahn, Ralf, Patti, Gary J, Kalisiak, Ewa, Miyamoto, Takashi, Schmidt, Manuela, Lo, Fang Yin, McBee, Joshua, Baliga, Nitin S, Siuzdak, Gary
Published in Analytical chemistry (Washington) (01.02.2011)
Published in Analytical chemistry (Washington) (01.02.2011)
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Journal Article
Adaptation of cells to new environments
Brooks, Aaron N, Turkarslan, Serdar, Beer, Karlyn D, Lo, Fang Yin, Baliga, Nitin S
Published in Wiley interdisciplinary reviews. Systems biology and medicine (01.09.2011)
Published in Wiley interdisciplinary reviews. Systems biology and medicine (01.09.2011)
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Journal Article
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis
Facciotti, Marc T, Pang, Wyming L, Lo, Fang-yin, Whitehead, Kenia, Koide, Tie, Masumura, Ken-ichi, Pan, Min, Kaur, Amardeep, Larsen, David J, Reiss, David J, Hoang, Linh, Kalisiak, Ewa, Northen, Trent, Trauger, Sunia A, Siuzdak, Gary, Baliga, Nitin S
Published in BMC systems biology (14.05.2010)
Published in BMC systems biology (14.05.2010)
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Journal Article
Abstract 3147: Non-invasive detection of aristolochic acid exposure using ultra-sensitive duplex sequencing
Lo, Fang Yin, Valentine, Charles, Schmidt, Elizabeth, Williams, Lindsey, Boot, Arnoud, Rozen, Steve, Salk, Jesse
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Duplex sequencing identifies genomic features that determine susceptibility to benzopyrene-induced in vivo mutations
LeBlanc, Danielle P. M, Meier, Matthew, Lo, Fang Yin, Schmidt, Elizabeth, Valentine, Charles, Williams, Andrew, Salk, Jesse J, Yauk, Carole L, Marchetti, Francesco
Published in BMC genomics (28.07.2022)
Published in BMC genomics (28.07.2022)
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Journal Article
Duplex sequencing provides detailed characterization of mutation frequencies and spectra in the bone marrow of MutaMouse males exposed to procarbazine hydrochloride
Dodge, Annette E., LeBlanc, Danielle P. M., Zhou, Gu, Williams, Andrew, Meier, Matthew J., Van, Phu, Lo, Fang Yin, Valentine III, Charles C., Salk, Jesse J., Yauk, Carole L., Marchetti, Francesco
Published in Archives of toxicology (01.08.2023)
Published in Archives of toxicology (01.08.2023)
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Journal Article
Duplex Sequencing for Ultra-Low Frequency Measurable Residual Disease Detection in Adult Acute Myeloid Leukemia
Higgins, Jacob, Othus, Megan, Dillon, Laura W., Smith, Thomas H., Schmidt, Elizabeth, Yaplee, Jeffry, Lo, Fang Yin, Valentine, Charles C., Salk, Jesse J., Wood, Brent L., Hourigan, Christopher S., Radich, Jerald P.
Published in Blood (23.11.2021)
Published in Blood (23.11.2021)
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Journal Article
Abstract 5379: Stratification of colorectal cancer patients based on various sequencing platforms and tumor mutational burden
Lo, Fang Yin, Olson, Claire, Deutsch, Kerry, Saloranta, Tuuli, Golez, Inah, Yeatman, Timothy, Anderson, Steven, Madan, Anup
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article
Error-corrected duplex sequencing enables direct detection and quantification of mutations in human TK6 cells with strong inter-laboratory consistency
Cho, Eunnara, Swartz, Carol D., Williams, Andrew, V. Rivas, Miriam, Recio, Leslie, Witt, Kristine L., Schmidt, Elizabeth K., Yaplee, Jeffry, Smith, Thomas H., Van, Phu, Lo, Fang Yin, Valentine, Charles C., Salk, Jesse J., Marchetti, Francesco, Smith-Roe, Stephanie L., Yauk, Carole L.
Published in Mutation research. Genetic toxicology and environmental mutagenesis (01.07.2023)
Published in Mutation research. Genetic toxicology and environmental mutagenesis (01.07.2023)
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Journal Article
Duplex Sequencing with Patient-Specific Hybrid Capture Panels Reveals Ultra-Low Frequency Measurable Residual Disease in Pediatric Acute Myeloid Leukemia
Higgins, Jacob, Lo, Fang Yin, Hipp, Michael J., Valentine, Charles C., Williams, Lindsey N., Leonti, Amanda R., Ries, Rhonda E., Radich, Jerald P., Meshinchi, Soheil, Huang, Benjamin J., Salk, Jesse J.
Published in Blood (05.11.2020)
Published in Blood (05.11.2020)
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Journal Article
Adopting duplex sequencing technology for genetic toxicity testing: A proof-of-concept mutagenesis experiment with N-ethyl-N-nitrosourea (ENU)-exposed rats
Smith-Roe, Stephanie L., Hobbs, Cheryl A., Hull, Victoria, Todd Auman, J., Recio, Leslie, Streicker, Michael A., Rivas, Miriam V., Pratt, Gabriel A., Lo, Fang Yin, Higgins, Jacob E., Schmidt, Elizabeth K., Williams, Lindsey N., Nachmanson, Daniela, Valentine III, Charles C., Salk, Jesse J., Witt, Kristine L.
Published in Mutation research. Genetic toxicology and environmental mutagenesis (01.10.2023)
Published in Mutation research. Genetic toxicology and environmental mutagenesis (01.10.2023)
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Journal Article
Abstract 413: Neo-epitope detection and immune infiltrate analysis of colorectal cancer samples
Lo, Fang Yin, Mandloi, Nitin, Yeatman, Timothy, Paul, Kiran, Patil, Ashwini, Anderson, Steven, Gupta, Ravi, Madan, Anup
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Journal Article
Abstract 3418: Cross-comparison of targeted gene expression technologies for patient stratification
Venkatramanan, Raghavee, Saloranta, Tuuli, Golez, Inah, Swanson, Elliot, Kruse, Kimberly, Satele, Vickie, Tahir, Saman, Dow, Sally, Anderson, Evan, Hudson, Briana, Chee, Spencer, Deutsch, Kerry, Anderson, Steve, Lo, Fang Yin, Madan, Anup
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article