Protein-folding dynamics: overview of molecular simulation techniques
Scheraga, Harold A, Khalili, Mey, Liwo, Adam
Published in Annual review of physical chemistry (01.01.2007)
Published in Annual review of physical chemistry (01.01.2007)
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A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. III. Determination of scale-consistent backbone-local and correlation potentials in the UNRES force field and force-field calibration and validation
Liwo, Adam, Sieradzan, Adam K, Lipska, Agnieszka G, Czaplewski, Cezary, Joung, InSuk, Żmudzińska, Wioletta, Hałabis, Anna, Ołdziej, Stanisław
Published in The Journal of chemical physics (21.04.2019)
Published in The Journal of chemical physics (21.04.2019)
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Maximum Likelihood Calibration of the UNRES Force Field for Simulation of Protein Structure and Dynamics
Krupa, Paweł, Hałabis, Anna, Żmudzińska, Wioletta, Ołdziej, Stanisław, Scheraga, Harold A, Liwo, Adam
Published in Journal of chemical information and modeling (25.09.2017)
Published in Journal of chemical information and modeling (25.09.2017)
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Coarse-grained force field: general folding theory
LIWO, Adam, YI HE, SCHERAGA, Harold A
Published in Physical chemistry chemical physics : PCCP (01.01.2011)
Published in Physical chemistry chemical physics : PCCP (01.01.2011)
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Conformational Dynamics of the Trp-Cage Miniprotein at Its Folding Temperature
Hałabis, Anna, Żmudzińska, Wioletta, Liwo, Adam, Ołdziej, Stanisław
Published in The journal of physical chemistry. B (14.06.2012)
Published in The journal of physical chemistry. B (14.06.2012)
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A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions
Liwo, Adam, Baranowski, Maciej, Czaplewski, Cezary, Gołaś, Ewa, He, Yi, Jagieła, Dawid, Krupa, Paweł, Maciejczyk, Maciej, Makowski, Mariusz, Mozolewska, Magdalena A., Niadzvedtski, Andrei, Ołdziej, Stanisław, Scheraga, Harold A., Sieradzan, Adam K., Ślusarz, Rafał, Wirecki, Tomasz, Yin, Yanping, Zaborowski, Bartłomiej
Published in Journal of molecular modeling (01.08.2014)
Published in Journal of molecular modeling (01.08.2014)
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Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13
Fajardo, J. Eduardo, Shrestha, Rojan, Gil, Nelson, Belsom, Adam, Crivelli, Silvia N., Czaplewski, Cezary, Fidelis, Krzysztof, Grudinin, Sergei, Karasikov, Mikhail, Karczyńska, Agnieszka S., Kryshtafovych, Andriy, Leitner, Alexander, Liwo, Adam, Lubecka, Emilia A., Monastyrskyy, Bohdan, Pagès, Guillaume, Rappsilber, Juri, Sieradzan, Adam K., Sikorska, Celina, Trabjerg, Esben, Fiser, Andras
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
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Physics-Based Potentials for the Coupling between Backbone- and Side-Chain-Local Conformational States in the United Residue (UNRES) Force Field for Protein Simulations
Sieradzan, Adam K, Krupa, Paweł, Scheraga, Harold A, Liwo, Adam, Czaplewski, Cezary
Published in Journal of chemical theory and computation (10.02.2015)
Published in Journal of chemical theory and computation (10.02.2015)
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Analysis of Procollagen C-Proteinase Enhancer-1/Glycosaminoglycan Binding Sites and of the Potential Role of Calcium Ions in the Interaction
Potthoff, Jan, Bojarski, Krzysztof K, Kohut, Gergely, Lipska, Agnieszka G, Liwo, Adam, Kessler, Efrat, Ricard-Blum, Sylvie, Samsonov, Sergey A
Published in International journal of molecular sciences (10.10.2019)
Published in International journal of molecular sciences (10.10.2019)
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Folding kinetics of WW domains with the united residue force field for bridging microscopic motions and experimental measurements
Zhou, Rui, Maisuradze, Gia G., Suñol, David, Todorovski, Toni, Macias, Maria J., Xiao, Yi, Scheraga, Harold A., Czaplewski, Cezary, Liwo, Adam
Published in Proceedings of the National Academy of Sciences - PNAS (23.12.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (23.12.2014)
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