A practical guide to amplicon and metagenomic analysis of microbiome data
Liu, Yong-Xin, Qin, Yuan, Chen, Tong, Lu, Meiping, Qian, Xubo, Guo, Xiaoxuan, Bai, Yang
Published in Protein & cell (01.05.2021)
Published in Protein & cell (01.05.2021)
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EVenn: Easy to create repeatable and editable Venn diagrams and Venn networks online
Chen, Tong, Zhang, Haiyan, Liu, Yu, Liu, Yong-Xin, Huang, Luqi
Published in Journal of genetics and genomics (20.09.2021)
Published in Journal of genetics and genomics (20.09.2021)
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A specialized metabolic network selectively modulates Arabidopsis root microbiota
Huang, Ancheng C, Jiang, Ting, Liu, Yong-Xin, Bai, Yue-Chen, Reed, James, Qu, Baoyuan, Goossens, Alain, Nützmann, Hans-Wilhelm, Bai, Yang, Osbourn, Anne
Published in Science (American Association for the Advancement of Science) (10.05.2019)
Published in Science (American Association for the Advancement of Science) (10.05.2019)
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NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice
Zhang, Jingying, Liu, Yong-Xin, Zhang, Na, Hu, Bin, Jin, Tao, Xu, Haoran, Qin, Yuan, Yan, Pengxu, Zhang, Xiaoning, Guo, Xiaoxuan, Hui, Jing, Cao, Shouyun, Wang, Xin, Wang, Chao, Wang, Hui, Qu, Baoyuan, Fan, Guangyi, Yuan, Lixing, Garrido-Oter, Ruben, Chu, Chengcai, Bai, Yang
Published in Nature biotechnology (01.06.2019)
Published in Nature biotechnology (01.06.2019)
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High-throughput cultivation and identification of bacteria from the plant root microbiota
Zhang, Jingying, Liu, Yong-Xin, Guo, Xiaoxuan, Qin, Yuan, Garrido-Oter, Ruben, Schulze-Lefert, Paul, Bai, Yang
Published in Nature protocols (01.02.2021)
Published in Nature protocols (01.02.2021)
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ggClusterNet: An R package for microbiome network analysis and modularity‐based multiple network layouts
Wen, Tao, Xie, Penghao, Yang, Shengdie, Niu, Guoqing, Liu, Xiaoyu, Ding, Zhexu, Xue, Chao, Liu, Yong‐Xin, Shen, Qirong, Yuan, Jun
Published in iMeta (01.09.2022)
Published in iMeta (01.09.2022)
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Root microbiota shift in rice correlates with resident time in the field and developmental stage
Zhang, Jingying, Zhang, Na, Liu, Yong-Xin, Zhang, Xiaoning, Hu, Bin, Qin, Yuan, Xu, Haoran, Wang, Hui, Guo, Xiaoxuan, Qian, Jingmei, Wang, Wei, Zhang, Pengfan, Jin, Tao, Chu, Chengcai, Bai, Yang
Published in Science China. Life sciences (01.06.2018)
Published in Science China. Life sciences (01.06.2018)
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Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical prediction
Qian, Xubo, Liu, Yong-Xin, Ye, Xiaohong, Zheng, Wenjie, Lv, Shaoxia, Mo, Miaojun, Lin, Jinjing, Wang, Wenqin, Wang, Weihan, Zhang, Xianning, Lu, Meiping
Published in BMC genomics (07.04.2020)
Published in BMC genomics (07.04.2020)
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A guide to human microbiome research: study design, sample collection, and bioinformatics analysis
Qian, Xu-Bo, Chen, Tong, Xu, Yi-Ping, Chen, Lei, Sun, Fu-Xiang, Lu, Mei-Ping, Liu, Yong-Xin
Published in Chinese medical journal (05.08.2020)
Published in Chinese medical journal (05.08.2020)
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Journal Article
Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota
Chen, Qingwen, Jiang, Ting, Liu, Yong-Xin, Liu, Haili, Zhao, Tao, Liu, Zhixi, Gan, Xiangchao, Hallab, Asis, Wang, Xuemei, He, Juan, Ma, Yihua, Zhang, Fengxia, Jin, Tao, Schranz, M. Eric, Wang, Yong, Bai, Yang, Wang, Guodong
Published in Science China. Life sciences (01.07.2019)
Published in Science China. Life sciences (01.07.2019)
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An Arabidopsis Secondary Metabolite Directly Targets Expression of the Bacterial Type III Secretion System to Inhibit Bacterial Virulence
Wang, Wei, Yang, Jing, Zhang, Jian, Liu, Yong-Xin, Tian, Caiping, Qu, Baoyuan, Gao, Chulei, Xin, Peiyong, Cheng, Shujing, Zhang, Wenjing, Miao, Pei, Li, Lei, Zhang, Xiaojuan, Chu, Jinfang, Zuo, Jianru, Li, Jiayang, Bai, Yang, Lei, Xiaoguang, Zhou, Jian-Min
Published in Cell host & microbe (08.04.2020)
Published in Cell host & microbe (08.04.2020)
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EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research
Liu, Yong‐Xin, Chen, Lei, Ma, Tengfei, Li, Xiaofang, Zheng, Maosheng, Zhou, Xin, Chen, Liang, Qian, Xubo, Xi, Jiao, Lu, Hongye, Cao, Huiluo, Ma, Xiaoya, Bian, Bian, Zhang, Pengfan, Wu, Jiqiu, Gan, Ren‐You, Jia, Baolei, Sun, Linyang, Ju, Zhicheng, Gao, Yunyun, Wen, Tao, Chen, Tong
Published in iMeta (01.02.2023)
Published in iMeta (01.02.2023)
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High-fat diet-disturbed gut microbiota-colonocyte interactions contribute to dysregulating peripheral tryptophan-kynurenine metabolism
Sun, Penghao, Wang, Mengli, Liu, Yong-Xin, Li, Luqi, Chai, Xuejun, Zheng, Wei, Chen, Shulin, Zhu, Xiaoyan, Zhao, Shanting
Published in Microbiome (19.07.2023)
Published in Microbiome (19.07.2023)
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Effects of Supplement Irrigation and Nitrogen Application Levels on Soil Carbon–Nitrogen Content and Yield of One-Year Double Cropping Maize in Subtropical Region
Wang, Gui-Yang, Hu, Yu-Xin, Liu, Yong-Xin, Ahmad, Shakeel, Zhou, Xun-Bo
Published in Water (Basel) (01.05.2021)
Published in Water (Basel) (01.05.2021)
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