Automated Design of Efficient and Functionally Diverse Enzyme Repertoires
Khersonsky, Olga, Lipsh, Rosalie, Avizemer, Ziv, Ashani, Yacov, Goldsmith, Moshe, Leader, Haim, Dym, Orly, Rogotner, Shelly, Trudeau, Devin L., Prilusky, Jaime, Amengual-Rigo, Pep, Guallar, Victor, Tawfik, Dan S., Fleishman, Sarel J.
Published in Molecular cell (04.10.2018)
Published in Molecular cell (04.10.2018)
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Journal Article
Assessing and enhancing foldability in designed proteins
Listov, Dina, Lipsh‐Sokolik, Rosalie, Rosset, Stéphane, Yang, Che, Correia, Bruno E., Fleishman, Sarel Jacob
Published in Protein science (01.09.2022)
Published in Protein science (01.09.2022)
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Journal Article
Ultrahigh specificity in a network of computationally designed protein-interaction pairs
Netzer, Ravit, Listov, Dina, Lipsh, Rosalie, Dym, Orly, Albeck, Shira, Knop, Orli, Kleanthous, Colin, Fleishman, Sarel J
Published in Nature communications (11.12.2018)
Published in Nature communications (11.12.2018)
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Journal Article
Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces
Warszawski, Shira, Borenstein Katz, Aliza, Lipsh, Rosalie, Khmelnitsky, Lev, Ben Nissan, Gili, Javitt, Gabriel, Dym, Orly, Unger, Tamar, Knop, Orli, Albeck, Shira, Diskin, Ron, Fass, Deborah, Sharon, Michal, Fleishman, Sarel J
Published in PLoS computational biology (23.08.2019)
Published in PLoS computational biology (23.08.2019)
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Journal Article
Highly active enzymes by automated combinatorial backbone assembly and sequence design
Lapidoth, Gideon, Khersonsky, Olga, Lipsh, Rosalie, Dym, Orly, Albeck, Shira, Rogotner, Shelly, Fleishman, Sarel J
Published in Nature communications (17.07.2018)
Published in Nature communications (17.07.2018)
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Journal Article
Design of a stable human acid‐β‐glucosidase: towards improved Gaucher disease therapy and mutation classification
Pokorna, Sarka, Khersonsky, Olga, Lipsh‐Sokolik, Rosalie, Goldenzweig, Adi, Nielsen, Rebekka, Ashani, Yacov, Peleg, Yoav, Unger, Tamar, Albeck, Shira, Dym, Orly, Tirosh, Asa, Tarayra, Rana, Hocquemiller, Michaël, Laufer, Ralph, Ben‐Dor, Shifra, Silman, Israel, Sussman, Joel L., Fleishman, Sarel J., Futerman, Anthony H.
Published in The FEBS journal (01.07.2023)
Published in The FEBS journal (01.07.2023)
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Journal Article
Correction: Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces
Warszawski, Shira, Borenstein Katz, Aliza, Lipsh, Rosalie, Khmelnitsky, Lev, Ben Nissan, Gili, Javitt, Gabriel, Dym, Orly, Unger, Tamar, Knop, Orli, Albeck, Shira, Diskin, Ron, Fass, Deborah, Sharon, Michal, Fleishman, Sarel J
Published in PLoS computational biology (21.10.2020)
Published in PLoS computational biology (21.10.2020)
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Journal Article
Designed active-site library reveals thousands of functional GFP variants
Weinstein, Jonathan Yaacov, Martí-Gómez, Carlos, Lipsh-Sokolik, Rosalie, Hoch, Shlomo Yakir, Liebermann, Demian, Nevo, Reinat, Weissman, Haim, Petrovich-Kopitman, Ekaterina, Margulies, David, Ivankov, Dmitry, McCandlish, David M, Fleishman, Sarel J
Published in Nature communications (20.05.2023)
Published in Nature communications (20.05.2023)
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Journal Article
Addressing epistasis in the design of protein function
Lipsh-Sokolik, Rosalie, Fleishman, Sarel J.
Published in Proceedings of the National Academy of Sciences - PNAS (20.08.2024)
Published in Proceedings of the National Academy of Sciences - PNAS (20.08.2024)
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Journal Article
Phosphate‐binding protein from Polaromonas JS666: purification, characterization, crystallization and sulfur SAD phasing
Pegos, Vanessa R., Hey, Louis, LaMirande, Jacob, Pfeffer, Rachel, Lipsh, Rosalie, Amitay, Moshe, Gonzalez, Daniel, Elias, Mikael
Published in Acta crystallographica. Section F, Structural biology communications (01.06.2017)
Published in Acta crystallographica. Section F, Structural biology communications (01.06.2017)
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Journal Article
Computationally designed pyocyanin demethylase acts synergistically with tobramycin to kill recalcitrant Pseudomonas aeruginosa biofilms
VanDrisse, Chelsey M, Lipsh-Sokolik, Rosalie, Khersonsky, Olga, Fleishman, Sarel J, Newman, Dianne K
Published in Proceedings of the National Academy of Sciences - PNAS (23.03.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (23.03.2021)
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Journal Article
Assessing and enhancing foldability in designed proteins
Listov, Dina, Lipsh-Sokolik, Rosalie, Rosset, Stephane, Yang, Che, Correia, Bruno E, Sarel Jacob Fleishman
Published in bioRxiv (07.05.2022)
Published in bioRxiv (07.05.2022)
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Paper
Designed active-site library reveals thousands of functional GFP variants
Jonathan Yaacov Weinstein, Carlos Marti Gomez Aldaravi, Lipsh-Sokolik, Rosalie, Shlomo Yakir Hoch, Liebermann, Demian, Nevo, Reinat, Weissman, Haim, Petrovich-Kopitman, Ekaterina, Margulies, David, Ivankov, Dmitry, Mccandlish, David, Sarel Jacob Fleishman
Published in bioRxiv (19.01.2023)
Published in bioRxiv (19.01.2023)
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Paper