Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
Du, Pan, Zhang, Xiao, Huang, Chiang-Ching, Jafari, Nadereh, Kibbe, Warren A, Hou, Lifang, Lin, Simon M
Published in BMC bioinformatics (30.11.2010)
Published in BMC bioinformatics (30.11.2010)
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ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Zhu, Lihua J, Gazin, Claude, Lawson, Nathan D, Pagès, Hervé, Lin, Simon M, Lapointe, David S, Green, Michael R
Published in BMC bioinformatics (11.05.2010)
Published in BMC bioinformatics (11.05.2010)
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Assessment of 135 794 Pediatric Patients Tested for Severe Acute Respiratory Syndrome Coronavirus 2 Across the United States
Bailey, L Charles, Razzaghi, Hanieh, Burrows, Evanette K, Bunnell, H Timothy, Camacho, Peter E F, Christakis, Dimitri A, Eckrich, Daniel, Kitzmiller, Melody, Lin, Simon M, Magnusen, Brianna C, Newland, Jason, Pajor, Nathan M, Ranade, Daksha, Rao, Suchitra, Sofela, Olamiji, Zahner, Janet, Bruno, Cortney, Forrest, Christopher B
Published in JAMA pediatrics (01.02.2021)
Published in JAMA pediatrics (01.02.2021)
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Journal Article
Genome-wide DNA methylation indicates silencing of tumor suppressor genes in uterine leiomyoma
Navarro, Antonia, Yin, Ping, Monsivais, Diana, Lin, Simon M, Du, Pan, Wei, Jian-Jun, Bulun, Serdar E
Published in PloS one (13.03.2012)
Published in PloS one (13.03.2012)
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Annotating the human genome with Disease Ontology
Osborne, John D, Flatow, Jared, Holko, Michelle, Lin, Simon M, Kibbe, Warren A, Zhu, Lihua Julie, Danila, Maria I, Feng, Gang, Chisholm, Rex L
Published in BMC genomics (07.07.2009)
Published in BMC genomics (07.07.2009)
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From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations
Du, Pan, Feng, Gang, Flatow, Jared, Song, Jie, Holko, Michelle, Kibbe, Warren A., Lin, Simon M.
Published in Bioinformatics (15.06.2009)
Published in Bioinformatics (15.06.2009)
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Technical reproducibility of genotyping SNP arrays used in genome-wide association studies
Hong, Huixiao, Xu, Lei, Liu, Jie, Jones, Wendell D, Su, Zhenqiang, Ning, Baitang, Perkins, Roger, Ge, Weigong, Miclaus, Kelci, Zhang, Li, Park, Kyunghee, Green, Bridgett, Han, Tao, Fang, Hong, Lambert, Christophe G, Vega, Silvia C, Lin, Simon M, Jafari, Nadereh, Czika, Wendy, Wolfinger, Russell D, Goodsaid, Federico, Tong, Weida, Shi, Leming
Published in PloS one (07.09.2012)
Published in PloS one (07.09.2012)
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A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads
Jiang, Hongmei, An, Lingling, Lin, Simon M, Feng, Gang, Qiu, Yuqing
Published in PloS one (01.10.2012)
Published in PloS one (01.10.2012)
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Journal Article
Graph embedding on biomedical networks: methods, applications and evaluations
Yue, Xiang, Wang, Zhen, Huang, Jingong, Parthasarathy, Srinivasan, Moosavinasab, Soheil, Huang, Yungui, Lin, Simon M, Zhang, Wen, Zhang, Ping, Sun, Huan
Published in Bioinformatics (15.02.2020)
Published in Bioinformatics (15.02.2020)
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Journal Article
Loss of patched and disruption of granule cell development in a pre-neoplastic stage of medulloblastoma
Oliver, Trudy G, Read, Tracy Ann, Kessler, Jessica D, Mehmeti, Anriada, Wells, Jonathan F, Huynh, Trang T T, Lin, Simon M, Wechsler-Reya, Robert J
Published in Development (Cambridge) (01.05.2005)
Published in Development (Cambridge) (01.05.2005)
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Journal Article
The Financial Impact of Genetic Diseases in a Pediatric Accountable Care Organization
Miller, Katherine E, Hoyt, Richard, Rust, Steve, Doerschuk, Rachel, Huang, Yungui, Lin, Simon M
Published in Frontiers in public health (28.02.2020)
Published in Frontiers in public health (28.02.2020)
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Journal Article
Transcriptional Profiling of the Sonic Hedgehog Response: A Critical Role for N-myc in Proliferation of Neuronal Precursors
Oliver, Trudy G., Grasfeder, Linda L., Carroll, Audra L., Kaiser, Constanze, Gillingham, Christine L., Lin, Simon M., Wickramasinghe, Rasika, Scott, Matthew P., Wechsler-Reya, Robert J.
Published in Proceedings of the National Academy of Sciences - PNAS (10.06.2003)
Published in Proceedings of the National Academy of Sciences - PNAS (10.06.2003)
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A framework for annotating human genome in disease context
Xu, Wei, Wang, Huisong, Cheng, Wenqing, Fu, Dong, Xia, Tian, Kibbe, Warren A, Lin, Simon M
Published in PloS one (10.12.2012)
Published in PloS one (10.12.2012)
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Journal Article
Heterogeneity of Flt3-Expressing Multipotent Progenitors in Mouse Bone Marrow
Lai, Anne Y, Lin, Simon M, Kondo, Motonari
Published in The Journal of immunology (1950) (15.10.2005)
Published in The Journal of immunology (1950) (15.10.2005)
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Journal Article
Correction: A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads
Jiang, Hongmei, An, Lingling, Lin, Simon M., Feng, Gang, Qiu, Yuqing
Published in PloS one (17.05.2013)
Published in PloS one (17.05.2013)
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Model-based variance-stabilizing transformation for Illumina microarray data
Lin, Simon M., Du, Pan, Huber, Wolfgang, Kibbe, Warren A.
Published in Nucleic acids research (01.02.2008)
Published in Nucleic acids research (01.02.2008)
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