Direct detection of early-stage cancers using circulating tumor DNA
Phallen, Jillian, Sausen, Mark, Adleff, Vilmos, Leal, Alessandro, Hruban, Carolyn, White, James, Anagnostou, Valsamo, Fiksel, Jacob, Cristiano, Stephen, Papp, Eniko, Speir, Savannah, Reinert, Thomas, Orntoft, Mai-Britt Worm, Woodward, Brian D, Murphy, Derek, Parpart-Li, Sonya, Riley, David, Nesselbush, Monica, Sengamalay, Naomi, Georgiadis, Andrew, Li, Qing Kay, Madsen, Mogens Rørbæk, Mortensen, Frank Viborg, Huiskens, Joost, Punt, Cornelis, van Grieken, Nicole, Fijneman, Remond, Meijer, Gerrit, Husain, Hatim, Scharpf, Robert B, Diaz, Jr, Luis A, Jones, Siân, Angiuoli, Sam, Ørntoft, Torben, Nielsen, Hans Jørgen, Andersen, Claus Lindbjerg, Velculescu, Victor E
Published in Science translational medicine (16.08.2017)
Published in Science translational medicine (16.08.2017)
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A machine learning approach for somatic mutation discovery
Wood, Derrick E, White, James R, Georgiadis, Andrew, Van Emburgh, Beth, Parpart-Li, Sonya, Mitchell, Jason, Anagnostou, Valsamo, Niknafs, Noushin, Karchin, Rachel, Papp, Eniko, McCord, Christine, LoVerso, Peter, Riley, David, Diaz, Jr, Luis A, Jones, Siân, Sausen, Mark, Velculescu, Victor E, Angiuoli, Samuel V
Published in Science translational medicine (05.09.2018)
Published in Science translational medicine (05.09.2018)
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Analytical validation of a multi-cancer early detection test with cancer signal origin using a cell-free DNA-based targeted methylation assay
Alexander, Gregory E, Lin, Wendy, Ortega, Fabian E, Ramaiah, Madhuvanthi, Jung, Byoungsok, Ji, Lijuan, Revenkova, Ekaterina, Shah, Payal, Croisetiere, Christian, Berman, Jennifer R, Eubank, Lane, Naik, Gunjan, Brooks, Jacqueline, Mich, Andrea, Shojaee, Seyedmehdi, Ronaghi, Neda, Chawla, Hemanshi, Hou, Xinyi, Liu, Qinwen, Yakym, Christopher-James A V, Moradi, Patriss Wais, Halks-Miller, Meredith, Aravanis, Alexander M, Parpart-Li, Sonya, Hunkapiller, Nathan
Published in PloS one (14.04.2023)
Published in PloS one (14.04.2023)
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Cancer therapy shapes the fitness landscape of clonal hematopoiesis
Bolton, Kelly L., Ptashkin, Ryan N., Gao, Teng, Braunstein, Lior, Devlin, Sean M., Kelly, Daniel, Patel, Minal, Berthon, Antonin, Syed, Aijazuddin, Yabe, Mariko, Coombs, Catherine C., Caltabellotta, Nicole M., Walsh, Mike, Offit, Kenneth, Stadler, Zsofia, Mandelker, Diana, Schulman, Jessica, Patel, Akshar, Philip, John, Bernard, Elsa, Gundem, Gunes, Ossa, Juan E. Arango, Levine, Max, Martinez, Juan S. Medina, Farnoud, Noushin, Glodzik, Dominik, Li, Sonya, Robson, Mark E., Lee, Choonsik, Pharoah, Paul D. P., Stopsack, Konrad H., Spitzer, Barbara, Mantha, Simon, Fagin, James, Boucai, Laura, Gibson, Christopher J., Ebert, Benjamin L., Young, Andrew L., Druley, Todd, Takahashi, Koichi, Gillis, Nancy, Ball, Markus, Padron, Eric, Hyman, David M., Baselga, Jose, Norton, Larry, Gardos, Stuart, Klimek, Virginia M., Scher, Howard, Bajorin, Dean, Paraiso, Eder, Benayed, Ryma, Arcila, Maria E., Ladanyi, Marc, Solit, David B., Berger, Michael F., Tallman, Martin, Garcia-Closas, Montserrat, Chatterjee, Nilanjan, Diaz, Luis A., Levine, Ross L., Morton, Lindsay M., Zehir, Ahmet, Papaemmanuil, Elli
Published in Nature genetics (01.11.2020)
Published in Nature genetics (01.11.2020)
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Personalized genomic analyses for cancer mutation discovery and interpretation
Jones, Siân, Anagnostou, Valsamo, Lytle, Karli, Parpart-Li, Sonya, Nesselbush, Monica, Riley, David R, Shukla, Manish, Chesnick, Bryan, Kadan, Maura, Papp, Eniko, Galens, Kevin G, Murphy, Derek, Zhang, Theresa, Kann, Lisa, Sausen, Mark, Angiuoli, Samuel V, Diaz, Jr, Luis A, Velculescu, Victor E
Published in Science translational medicine (15.04.2015)
Published in Science translational medicine (15.04.2015)
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The Effect of Preservative and Temperature on the Analysis of Circulating Tumor DNA
Parpart-Li, Sonya, Bartlett, Bjarne, Popoli, Maria, Adleff, Vilmos, Tucker, Laura, Steinberg, Rebecca, Georgiadis, Andrew, Phallen, Jill, Brahmer, Julie, Azad, Nilo, Browner, Ilene, Laheru, Daniel, Velculescu, Victor E, Sausen, Mark, Diaz, Jr, Luis A
Published in Clinical cancer research (15.05.2017)
Published in Clinical cancer research (15.05.2017)
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Clinical implications of genomic alterations in the tumour and circulation of pancreatic cancer patients
Sausen, Mark, Phallen, Jillian, Adleff, Vilmos, Jones, Siân, Leary, Rebecca J., Barrett, Michael T., Anagnostou, Valsamo, Parpart-Li, Sonya, Murphy, Derek, Kay Li, Qing, Hruban, Carolyn A., Scharpf, Rob, White, James R., O’Dwyer, Peter J., Allen, Peter J., Eshleman, James R., Thompson, Craig B., Klimstra, David S., Linehan, David C., Maitra, Anirban, Hruban, Ralph H., Diaz, Luis A., Von Hoff, Daniel D., Johansen, Julia S., Drebin, Jeffrey A., Velculescu, Victor E.
Published in Nature communications (07.07.2015)
Published in Nature communications (07.07.2015)
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Abstract 112: Analytical performance of a cfDNA-based targeted methylation multi-cancer early detection test for population-scale screening
Alexander, Gregory E., Jung, Byoungsok, Ji, Lijuan, Revenkova, Ekaterina, Shah, Payal, Brooks, Jacqueline, Carter, Jeremy, Dong, Zhao, Eubank, Lane, Hosseini, Maryam, Hou, Xinyi, Kiarie, Hannah, Ronaghi, Neda, Ortega, Fabian E., Ramaiah, Madhuvanthi, Rhodes, Kate, Shaknovich, Rita, Shojaee, Seyedmehdi, Parpart-Li, Sonya, Hunkapiller, Nathan
Published in Cancer research (Chicago, Ill.) (01.07.2021)
Published in Cancer research (Chicago, Ill.) (01.07.2021)
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Journal Article
Abstract 1286: Analytical validation of an integrated next-generation sequencing pan-cancer liquid biopsy approach for detection of microsatellite instability
Georgiadis, Andrew, Wood, Derrick, Murphy, Derek, Parpart-Li, Sonya, Riley, David, Sengamalay, Naomi, Novak, Marian, Jones, Sian, Angiuoli, Samuel A., Sausen, Mark
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article
Abstract 721: Analytical validation of a multi-cancer early detection test with tissue localization using a cell-free DNA-based targeted methylation assay
Alexander, Gregory, Lin, Wendy, Ramaiah, Madhuvanthi, Jung, Byoungsok, Ji, Lijuan, Revenkova, Ekaterina, Shah, Payal, Croisetiere, Christian, Berman, Jennifer, Eubank, Lane, Naik, Gunjan, Brooks, Jacqueline, Mich, Andrea, Shojaee, Seyedmehdi, Ronaghi, Neda, Chawla, Hemanshi, Hou, Xinyi, Liu, Qinwen, Yakym, Christopher, Moradi, Patriss Wais, Halks-Miller, Meredith, Hunkapiller, Nathan, Parpart-Li, Sonya, Aravanis, Alexander
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Abstract 3271: A machine learning approach for somatic mutation discovery
Wood, Derrick, White, James, Georgiadis, Andrew, Emburgh, Beth Van, Parpart-Li, Sonya, Mitchell, Jason, Anagnostou, Valsamo, Niknafs, Noushin, Karchin, Rachel, Papp, Eniko, McCord, Christine, Loverso, Peter, Riley, David, Diaz, Luis A., Jones, Sian, Sausen, Mark, Velculescu, Victor E., Angiuoli, Samuel
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Abstract 3534: Analytical performance of a comprehensive genomic profiling system to detect actionable genetic alterations in NSCLC
Gerding, Kelly, Keefer, Laurel, McCord, Christine, Greer, Amy, Shewale, Shantanu, Barkley, Nicole, Sagini, Eileen, Johng, Dorhyun, Valkenburg, Kenneth, Gilley, Caitlin, Ganey, Colby, Hu, Alvis, Denier, Diandra, Jones, Lorenzo, Oliveras, Christina, Joseph, Gregory, Joshi, Kartikeya, Hernandez, James, Gault, Christopher, Papp, Eniko, Qin, Peibing, Parpart-Li, Sonya, White, James, Sausen, Mark, Jones, Siân
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Abstract 3957: Optimized plasma collection procedures for liquid biopsy analyses in cancer
Parpart-Li, Sonya T., Bartlett, Bjarne, Popoli, Maria, Adleff, Vilmos, Brahmer, Julie, Azad, Nilo, Bonerigo, Sarah, Browner, Ilene, Ryan, Amy, Velculescu, Victor, Sausen, Mark, Diaz, Luis A.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Abstract 604: Accurate identification and prioritization of candidate neoantigens from integrated cancer exome and transcriptome sequencing of FFPE samples
Novak, Marián, Angiuoli, Sam, Diaz, Luis A., Georgiadis, Andrew, Jones, Sian, Loverso, Peter R., Parpart-Li, Sonya, Sevdali, Maria, Velculescu, Victor E., Verner, Ellen L., White, James, Zhang, Theresa, Sausen, Mark
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Journal Article
Abstract 4954: Clinical validation of a cell-free DNA liquid biopsy approach for noninvasive molecular profiling
Nesselbush, Monica, Angiuoli, Samuel, Diaz, Luis A., Georgiadis, Andrew, Glynn, Shannon, Jones, Siân, Keefer, Laurel, LoVerso, Peter, Murphy, Derek, Parpart-Li, Sonya, Riley, David, Sengamalay, Naomi, Shukla, Manish, Simmons, John, Talati, Snehal, Steinberg, Rebecca, Tucker, Laura, Velculescu, Victor E., Verner, Ellen, Villarta, Angela, Sausen, Mark
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Journal Article
Abstract LB-246: Detection of circulating tumor DNA in early stage cancers
Phallen, Jillian A., Sausen, Mark, Adleff, Vilmos, Leal, Alessandro, Fiksel, Jacob, Hruban, Carolyn, Speir, Savannah, Papp, Eniko, Anagnostou, Valsamo, Orntoft, Mai-Britt W., Reinert, Thomas, Woodward, Brian D., Murphy, Derek, Parpart-Li, Sonya, Riley, David, Nesselbush, Monica, Sengamalay, Naomi, Georgiadis, Andrew, Scharpf, Rob, Li, Qing K., Jones, Sian, Angiuoli, Samuel, Huiskens, Joost, Punt, Cornelis, Grieken, Nicole van, Fijneman, Remond, Meijer, Gerrit, Husain, Hatim, Diaz, Luis, Ørntoft, Torben, Nielsen, Hans J., Anderson, Claus L., Velculescu, Victor E.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Journal Article
Abstract 5246: Noninvasive detection of MET gene amplification in the circulation of cancer patients
Sausen, Mark, Angiuoli, Samuel V., Chesnick, Bryan, Galens, Kevin, Jones, Siân, Kadan, Maura, Kann, Lisa, Lytle, Karli, Murphy, Derek, Nesselbush, Monica, Parpart-Li, Sonya, Riley, David, Shukla, Manish, Zhang, Theresa, Velculescu, Victor E., Diaz, Luis A.
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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Abstract 2405: A method for comprehensive genomic analysis of cell free DNA
Parpart-Li, Sonya T., Angiuoli, Samuel V., Chesnick, Bryan, Galens, Kevin, Jones, Siân, Kadan, Maura, Kann, Lisa, Lytle, Karli, Murphy, Derek, Nesselbush, Monica, Phallen, Jillian, Riley, David, Shukla, Manish, Zhang, Theresa, Husain, Hatim, Velculescu, Victor E., Diaz, Luis A., Sausen, Mark
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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Journal Article
Abstract 3894: The importance of matched tumor and normal DNA for somatic mutation discovery and clinical interpretation
Jones, Siân, Sausen, Mark, Anagnostou, Valsamo, Angiuoli, Samuel V., Chesnick, Bryan, Galens, Kevin, Kadan, Maura, Kann, Lisa, Lytle, Karli, Murphy, Derek, Nesselbush, Monica, Papp, Eniko, Parpart-Li, Sonya, Riley, David, Shukla, Manish, Zhang, Theresa, Diaz, Luis A., Velculescu, Victor E.
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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