Durable coexistence of donor and recipient strains after fecal microbiota transplantation
Li, Simone S., Zhu, Ana, Benes, Vladimir, Costea, Paul I., Hercog, Rajna, Hildebrand, Falk, Huerta-Cepas, Jaime, Nieuwdorp, Max, Salojärvi, Jarkko, Voigt, Anita Y., Zeller, Georg, Sunagawa, Shinichi, de Vos, Willem M., Bork, Peer
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Published in Science (American Association for the Advancement of Science) (29.04.2016)
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Journal Article
MOCAT2: a metagenomic assembly, annotation and profiling framework
Kultima, Jens Roat, Coelho, Luis Pedro, Forslund, Kristoffer, Huerta-Cepas, Jaime, Li, Simone S, Driessen, Marja, Voigt, Anita Yvonne, Zeller, Georg, Sunagawa, Shinichi, Bork, Peer
Published in Bioinformatics (Oxford, England) (15.08.2016)
Published in Bioinformatics (Oxford, England) (15.08.2016)
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Journal Article
Extensive transmission of microbes along the gastrointestinal tract
Schmidt, Thomas Sb, Hayward, Matthew R, Coelho, Luis P, Li, Simone S, Costea, Paul I, Voigt, Anita Y, Wirbel, Jakob, Maistrenko, Oleksandr M, Alves, Renato Jc, Bergsten, Emma, de Beaufort, Carine, Sobhani, Iradj, Heintz-Buschart, Anna, Sunagawa, Shinichi, Zeller, Georg, Wilmes, Paul, Bork, Peer
Published in eLife (12.02.2019)
Published in eLife (12.02.2019)
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Journal Article
Drivers and determinants of strain dynamics following fecal microbiota transplantation
Schmidt, Thomas S. B., Li, Simone S., Maistrenko, Oleksandr M., Akanni, Wasiu, Coelho, Luis Pedro, Dolai, Sibasish, Fullam, Anthony, Glazek, Anna M., Hercog, Rajna, Herrema, Hilde, Jung, Ferris, Kandels, Stefanie, Orakov, Askarbek, Thielemann, Roman, von Stetten, Moritz, Van Rossum, Thea, Benes, Vladimir, Borody, Thomas J., de Vos, Willem M., Ponsioen, Cyriel Y., Nieuwdorp, Max, Bork, Peer
Published in Nature medicine (01.09.2022)
Published in Nature medicine (01.09.2022)
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Journal Article
Temporal and technical variability of human gut metagenomes
Voigt, Anita Y, Costea, Paul I, Kultima, Jens Roat, Li, Simone S, Zeller, Georg, Sunagawa, Shinichi, Bork, Peer
Published in Genome Biology (08.04.2015)
Published in Genome Biology (08.04.2015)
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Journal Article
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
Maistrenko, Oleksandr M., Mende, Daniel R., Luetge, Mechthild, Hildebrand, Falk, Schmidt, Thomas S. B., Li, Simone S., Rodrigues, João F. Matias, von Mering, Christian, Pedro Coelho, Luis, Huerta-Cepas, Jaime, Sunagawa, Shinichi, Bork, Peer
Published in The ISME Journal (01.05.2020)
Published in The ISME Journal (01.05.2020)
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Journal Article
Bacterial resistance to CRISPR-Cas antimicrobials
Uribe, Ruben V., Rathmer, Christin, Jahn, Leonie Johanna, Ellabaan, Mostafa Mostafa Hashim, Li, Simone S., Sommer, Morten Otto Alexander
Published in Scientific reports (26.08.2021)
Published in Scientific reports (26.08.2021)
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Journal Article
Strain dynamics of contaminating bacteria modulate the yield of ethanol biorefineries
de Oliveira Lino, Felipe Senne, Garg, Shilpa, Li, Simone S., Misiakou, Maria-Anna, Kang, Kang, Vale da Costa, Bruno Labate, Beyer-Pedersen, Tobias Svend-Aage, Giacon, Thamiris Guerra, Basso, Thiago Olitta, Panagiotou, Gianni, Sommer, Morten Otto Alexander
Published in Nature communications (22.06.2024)
Published in Nature communications (22.06.2024)
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Journal Article
A genome-wide screen in yeast identifies specific oxidative stress genes required for the maintenance of sub-cellular redox homeostasis
Ayer, Anita, Fellermeier, Sina, Fife, Christopher, Li, Simone S, Smits, Gertien, Meyer, Andreas J, Dawes, Ian W, Perrone, Gabriel G
Published in PloS one (06.09.2012)
Published in PloS one (06.09.2012)
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Journal Article
Time-course proteome analysis reveals the dynamic response of Cryptococcus gattii cells to fluconazole
Chong, Hin Siong, Campbell, Leona, Padula, Matthew P, Hill, Cameron, Harry, Elizabeth, Li, Simone S, Wilkins, Marc R, Herbert, Ben, Carter, Dee
Published in PloS one (06.08.2012)
Published in PloS one (06.08.2012)
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Journal Article
A Multidimensional Matrix for Systems Biology Research and Its Application to Interaction Networks
Pang, Chi Nam Ignatius, Goel, Apurv, Li, Simone S, Wilkins, Marc R
Published in Journal of proteome research (02.11.2012)
Published in Journal of proteome research (02.11.2012)
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Journal Article
Effective field theory analysis of the Coulomb breakup of the one-neutron halo nucleus $$^{19}$$C
Capel, Pierre, Phillips, Daniel R., Andis, Andrew, Bagnarol, Mirko, Behzadmoghaddam, Behnaz, Bonaiti, Francesca, Bubna, Rishabh, Capitani, Ylenia, Duerinck, Pierre-Yves, Durant, Victoria, Döpper, Niklas, El Boustani, Aya, Farrell, Roland, Geiger, Maurus, Gennari, Michael, Goldberg, Nitzan, Herko, Jakub, Kirchner, Tanja, Kubushishi, Live-Palm, Li, Zhen, Muli, Simone S. Li, Long, Alexander, Martin, Brady, Mohseni, Kamyar, Moumene, Imane, Paracone, Nicola, Parnes, Elad, Romeo, Beatriz, Springer, Victor, Svensson, Isak, Thim, Oliver, Yapa, Nuwan
Published in The European physical journal. A, Hadrons and nuclei (20.11.2023)
Published in The European physical journal. A, Hadrons and nuclei (20.11.2023)
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Journal Article
Visualization of the interactome: What are we looking at?
Fung, David C. Y., Li, Simone S., Goel, Apurv, Hong, Seok-Hee, Wilkins, Marc R.
Published in Proteomics (Weinheim) (01.05.2012)
Published in Proteomics (Weinheim) (01.05.2012)
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Journal Article
Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden
Schramm, Sarah-Jane, Li, Simone S., Jayaswal, Vivek, Fung, David C. Y., Campain, Anna E., Pang, Chi N. I., Scolyer, Richard A., Yang, Yee Hwa, Mann, Graham J., Wilkins, Marc R.
Published in Pigment cell and melanoma research (01.09.2013)
Published in Pigment cell and melanoma research (01.09.2013)
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