Advancements in Next-Generation Sequencing
Levy, Shawn E, Myers, Richard M
Published in Annual review of genomics and human genetics (31.08.2016)
Published in Annual review of genomics and human genetics (31.08.2016)
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Journal Article
The Pan-ErbB Negative Regulator Lrig1 Is an Intestinal Stem Cell Marker that Functions as a Tumor Suppressor
Powell, Anne E., Wang, Yang, Li, Yina, Poulin, Emily J., Means, Anna L., Washington, Mary K., Higginbotham, James N., Juchheim, Alwin, Prasad, Nripesh, Levy, Shawn E., Guo, Yan, Shyr, Yu, Aronow, Bruce J., Haigis, Kevin M., Franklin, Jeffrey L., Coffey, Robert J.
Published in Cell (30.03.2012)
Published in Cell (30.03.2012)
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Journal Article
Next-Generation Sequencing Strategies
Levy, Shawn E, Boone, Braden E
Published in Cold Spring Harbor perspectives in medicine (01.07.2019)
Published in Cold Spring Harbor perspectives in medicine (01.07.2019)
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Journal Article
Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma
Reddy, Anupama, Zhang, Jenny, Davis, Nicholas S., Moffitt, Andrea B., Love, Cassandra L., Waldrop, Alexander, Leppa, Sirpa, Pasanen, Annika, Meriranta, Leo, Karjalainen-Lindsberg, Marja-Liisa, Nørgaard, Peter, Pedersen, Mette, Gang, Anne O., Høgdall, Estrid, Heavican, Tayla B., Lone, Waseem, Iqbal, Javeed, Qin, Qiu, Li, Guojie, Kim, So Young, Healy, Jane, Richards, Kristy L., Fedoriw, Yuri, Bernal-Mizrachi, Leon, Koff, Jean L., Staton, Ashley D., Flowers, Christopher R., Paltiel, Ora, Goldschmidt, Neta, Calaminici, Maria, Clear, Andrew, Gribben, John, Nguyen, Evelyn, Czader, Magdalena B., Ondrejka, Sarah L., Collie, Angela, Hsi, Eric D., Tse, Eric, Au-Yeung, Rex K.H., Kwong, Yok-Lam, Srivastava, Gopesh, Choi, William W.L., Evens, Andrew M., Pilichowska, Monika, Sengar, Manju, Reddy, Nishitha, Li, Shaoying, Chadburn, Amy, Gordon, Leo I., Jaffe, Elaine S., Levy, Shawn, Rempel, Rachel, Tzeng, Tiffany, Happ, Lanie E., Dave, Tushar, Rajagopalan, Deepthi, Datta, Jyotishka, Dunson, David B., Dave, Sandeep S.
Published in Cell (05.10.2017)
Published in Cell (05.10.2017)
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Journal Article
Analysis of error profiles in deep next-generation sequencing data
Ma, Xiaotu, Shao, Ying, Tian, Liqing, Flasch, Diane A, Mulder, Heather L, Edmonson, Michael N, Liu, Yu, Chen, Xiang, Newman, Scott, Nakitandwe, Joy, Li, Yongjin, Li, Benshang, Shen, Shuhong, Wang, Zhaoming, Shurtleff, Sheila, Robison, Leslie L, Levy, Shawn, Easton, John, Zhang, Jinghui
Published in Genome Biology (14.03.2019)
Published in Genome Biology (14.03.2019)
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Journal Article
De novo gene mutations highlight patterns of genetic and neural complexity in schizophrenia
BIN XU, IONITA-LAZA, Iuliana, LOUW ROOS, J, BOONE, Braden, WOODRICK, Scarlet, YAN SUN, LEVY, Shawn, GOGOS, Joseph A, KARAYIORGOU, Maria
Published in Nature genetics (01.12.2012)
Published in Nature genetics (01.12.2012)
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Journal Article
α Cell Function and Gene Expression Are Compromised in Type 1 Diabetes
Brissova, Marcela, Haliyur, Rachana, Saunders, Diane, Shrestha, Shristi, Dai, Chunhua, Blodgett, David M., Bottino, Rita, Campbell-Thompson, Martha, Aramandla, Radhika, Poffenberger, Gregory, Lindner, Jill, Pan, Fong Cheng, von Herrath, Matthias G., Greiner, Dale L., Shultz, Leonard D., Sanyoura, May, Philipson, Louis H., Atkinson, Mark, Harlan, David M., Levy, Shawn E., Prasad, Nripesh, Stein, Roland, Powers, Alvin C.
Published in Cell reports (Cambridge) (06.03.2018)
Published in Cell reports (Cambridge) (06.03.2018)
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Journal Article
Age-dependent human β cell proliferation induced by glucagon-like peptide 1 and calcineurin signaling
Dai, Chunhua, Hang, Yan, Shostak, Alena, Poffenberger, Greg, Hart, Nathaniel, Prasad, Nripesh, Phillips, Neil, Levy, Shawn E, Greiner, Dale L, Shultz, Leonard D, Bottino, Rita, Kim, Seung K, Powers, Alvin C
Published in The Journal of clinical investigation (02.10.2017)
Published in The Journal of clinical investigation (02.10.2017)
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Journal Article
A cell-based systems biology assessment of human blood to monitor immune responses after influenza vaccination
Hoek, Kristen L, Samir, Parimal, Howard, Leigh M, Niu, Xinnan, Prasad, Nripesh, Galassie, Allison, Liu, Qi, Allos, Tara M, Floyd, Kyle A, Guo, Yan, Shyr, Yu, Levy, Shawn E, Joyce, Sebastian, Edwards, Kathryn M, Link, Andrew J
Published in PloS one (23.02.2015)
Published in PloS one (23.02.2015)
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Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
McIntyre, Alexa B R, Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J, Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S, Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan, Nur A, Subramanian, Poorani, Moffat, Kelly, Levy, Shawn, Lonardi, Stefano, Greenfield, Nick, Colwell, Rita R, Rosen, Gail L, Mason, Christopher E
Published in Genome Biology (21.09.2017)
Published in Genome Biology (21.09.2017)
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Journal Article
A signalling cascade of IL-33 to IL-13 regulates metaplasia in the mouse stomach
Petersen, Christine P, Meyer, Anne R, De Salvo, Carlo, Choi, Eunyoung, Schlegel, Cameron, Petersen, Alec, Engevik, Amy C, Prasad, Nripesh, Levy, Shawn E, Peebles, R Stokes, Pizarro, Theresa T, Goldenring, James R
Published in Gut (01.05.2018)
Published in Gut (01.05.2018)
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Journal Article
The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity
Alam, Samer G, Zhang, Qiao, Prasad, Nripesh, Li, Yuan, Chamala, Srikar, Kuchibhotla, Ram, Kc, Birendra, Aggarwal, Varun, Shrestha, Shristi, Jones, Angela L, Levy, Shawn E, Roux, Kyle J, Nickerson, Jeffrey A, Lele, Tanmay P
Published in Scientific reports (01.12.2016)
Published in Scientific reports (01.12.2016)
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Journal Article
Cell-Based Systems Biology Analysis of Human AS03-Adjuvanted H5N1 Avian Influenza Vaccine Responses: A Phase I Randomized Controlled Trial
Howard, Leigh M, Hoek, Kristen L, Goll, Johannes B, Samir, Parimal, Galassie, Allison, Allos, Tara M, Niu, Xinnan, Gordy, Laura E, Creech, C Buddy, Prasad, Nripesh, Jensen, Travis L, Hill, Heather, Levy, Shawn E, Joyce, Sebastian, Link, Andrew J, Edwards, Kathryn M
Published in PloS one (18.01.2017)
Published in PloS one (18.01.2017)
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Journal Article
Interrupted Glucagon Signaling Reveals Hepatic α Cell Axis and Role for L-Glutamine in α Cell Proliferation
Dean, E. Danielle, Li, Mingyu, Prasad, Nripesh, Wisniewski, Scott N., Von Deylen, Alison, Spaeth, Jason, Maddison, Lisette, Botros, Anthony, Sedgeman, Leslie R., Bozadjieva, Nadejda, Ilkayeva, Olga, Coldren, Anastasia, Poffenberger, Greg, Shostak, Alena, Semich, Michael C., Aamodt, Kristie I., Phillips, Neil, Yan, Hai, Bernal-Mizrachi, Ernesto, Corbin, Jackie D., Vickers, Kasey C., Levy, Shawn E., Dai, Chunhua, Newgard, Christopher, Gu, Wei, Stein, Roland, Chen, Wenbiao, Powers, Alvin C.
Published in Cell metabolism (06.06.2017)
Published in Cell metabolism (06.06.2017)
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Journal Article
Spaceflight Modifies Escherichia coli Gene Expression in Response to Antibiotic Exposure and Reveals Role of Oxidative Stress Response
Aunins, Thomas R, Erickson, Keesha E, Prasad, Nripesh, Levy, Shawn E, Jones, Angela, Shrestha, Shristi, Mastracchio, Rick, Stodieck, Louis, Klaus, David, Zea, Luis, Chatterjee, Anushree
Published in Frontiers in microbiology (16.03.2018)
Published in Frontiers in microbiology (16.03.2018)
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Journal Article
A Neurodegeneration-Specific Gene-Expression Signature of Acutely Isolated Microglia from an Amyotrophic Lateral Sclerosis Mouse Model
Chiu, Isaac M., Morimoto, Emiko T.A., Goodarzi, Hani, Liao, Jennifer T., O’Keeffe, Sean, Phatnani, Hemali P., Muratet, Michael, Carroll, Michael C., Levy, Shawn, Tavazoie, Saeed, Myers, Richard M., Maniatis, Tom
Published in Cell reports (Cambridge) (25.07.2013)
Published in Cell reports (Cambridge) (25.07.2013)
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Journal Article
KRAS-dependent sorting of miRNA to exosomes
Cha, Diana J, Franklin, Jeffrey L, Dou, Yongchao, Liu, Qi, Higginbotham, James N, Demory Beckler, Michelle, Weaver, Alissa M, Vickers, Kasey, Prasad, Nirpesh, Levy, Shawn, Zhang, Bing, Coffey, Robert J, Patton, James G
Published in eLife (01.07.2015)
Published in eLife (01.07.2015)
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Journal Article
Artificial intelligence enables comprehensive genome interpretation and nomination of candidate diagnoses for rare genetic diseases
De La Vega, Francisco M, Chowdhury, Shimul, Moore, Barry, Frise, Erwin, McCarthy, Jeanette, Hernandez, Edgar Javier, Wong, Terence, James, Kiely, Guidugli, Lucia, Agrawal, Pankaj B, Genetti, Casie A, Brownstein, Catherine A, Beggs, Alan H, Löscher, Britt-Sabina, Franke, Andre, Boone, Braden, Levy, Shawn E, Õunap, Katrin, Pajusalu, Sander, Huentelman, Matt, Ramsey, Keri, Naymik, Marcus, Narayanan, Vinodh, Veeraraghavan, Narayanan, Billings, Paul, Reese, Martin G, Yandell, Mark, Kingsmore, Stephen F
Published in Genome medicine (14.10.2021)
Published in Genome medicine (14.10.2021)
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Journal Article
Ecophysiological Examination of the Lake Erie Microcystis Bloom in 2014: Linkages between Biology and the Water Supply Shutdown of Toledo, OH
Steffen, Morgan M., Davis, Timothy W., McKay, R. Michael L., Bullerjahn, George S., Krausfeldt, Lauren E., Stough, Joshua M.A., Neitzey, Michelle L., Gilbert, Naomi E., Boyer, Gregory L., Johengen, Thomas H., Gossiaux, Duane C., Burtner, Ashley M., Palladino, Danna, Rowe, Mark D., Dick, Gregory J., Meyer, Kevin A., Levy, Shawn, Boone, Braden E., Stumpf, Richard P., Wynne, Timothy T., Zimba, Paul V., Gutierrez, Danielle, Wilhelm, Steven W.
Published in Environmental science & technology (20.06.2017)
Published in Environmental science & technology (20.06.2017)
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The genomic landscape of mantle cell lymphoma is related to the epigenetically determined chromatin state of normal B cells
Zhang, Jenny, Jima, Dereje, Moffitt, Andrea B., Liu, Qingquan, Czader, Magdalena, Hsi, Eric D., Fedoriw, Yuri, Dunphy, Cherie H., Richards, Kristy L., Gill, Javed I., Sun, Zhen, Love, Cassandra, Scotland, Paula, Lock, Eric, Levy, Shawn, Hsu, David S., Dunson, David, Dave, Sandeep S.
Published in Blood (08.05.2014)
Published in Blood (08.05.2014)
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