by Gangavarapu, Karthik, Latif, Alaa Abdel, Mullen, Julia L, Alkuzweny, Manar, Hufbauer, Emory, Tsueng, Ginger, Haag, Emily, Zeller, Mark, Aceves, Christine M, Zaiets, Karina, Cano, Marco, Zhou, Xinghua, Qian, Zhongchao, Sattler, Rachel, Matteson, Nathaniel L, Levy, Joshua I, Lee, Raphael T C, Freitas, Lucas, Maurer-Stroh, Sebastian, Suchard, Marc A, Wu, Chunlei, Su, Andrew I, Andersen, Kristian G, Hughes, Laura D
Published in Nature methods (01.04.2023)

by Yousif, Mukhlid, Rachida, Said, Taukobong, Setshaba, Ndlovu, Nkosenhle, Iwu-Jaja, Chinwe, Howard, Wayne, Moonsamy, Shelina, Mhlambi, Nompilo, Gwala, Sipho, Levy, Joshua I, Andersen, Kristian G, Scheepers, Cathrine, von Gottberg, Anne, Wolter, Nicole, Bhiman, Jinal N, Amoako, Daniel Gyamfi, Ismail, Arshad, Suchard, Melinda, McCarthy, Kerrigan
Published in Nature communications (10.10.2023)

by Jouandet, Genevieve C, Alpert, Michael H, Simões, José Miguel, Suhendra, Richard, Frank, Dominic D, Levy, Joshua I, Para, Alessia, Kath, William L, Gallio, Marco
Published in Nature communications (03.11.2023)

by Simões, José Miguel, Levy, Joshua I, Zaharieva, Emanuela E, Vinson, Leah T, Zhao, Peixiong, Alpert, Michael H, Kath, William L, Para, Alessia, Gallio, Marco
Published in Nature communications (06.04.2021)

by Barnes, Kayla G, Levy, Joshua I, Gauld, Jillian, Rigby, Jonathan, Kanjerwa, Oscar, Uzzell, Christopher B, Chilupsya, Chisomo, Anscombe, Catherine, Tomkins-Tinch, Christopher, Mbeti, Omar, Cairns, Edward, Thole, Herbert, McSweeney, Shannon, Chibwana, Marah G, Ashton, Philip M, Jere, Khuzwayo C, Meschke, John Scott, Diggle, Peter, Cornick, Jennifer, Chilima, Benjamin, Jambo, Kondwani, Andersen, Kristian G, Kawalazira, Gift, Paterson, Steve, Nyirenda, Tonney S, Feasey, Nicholas
Published in Nature communications (30.11.2023)

by Sandi, John Demby, Levy, Joshua I., Tapela, Kesego, Zeller, Mark, Yeboah, Joshua Afari, Saka, Daniel Frimpong, Grant, Donald S., Awandare, Gordon A., Quashie, Peter K., Andersen, Kristian G., Paemka, Lily
Published in Journal of Immunology Research (12.02.2024)

by Levy, Joshua I, Andersen, Kristian G, Knight, Rob, Karthikeyan, Smruthi
Published in Science (American Association for the Advancement of Science) (06.01.2023)

by Worobey, Michael, Levy, Joshua I, Malpica Serrano, Lorena, Crits-Christoph, Alexander, Pekar, Jonathan E, Goldstein, Stephen A, Rasmussen, Angela L, Kraemer, Moritz U G, Newman, Chris, Koopmans, Marion P G, Suchard, Marc A, Wertheim, Joel O, Lemey, Philippe, Robertson, David L, Garry, Robert F, Holmes, Edward C, Rambaut, Andrew, Andersen, Kristian G
Published in Science (American Association for the Advancement of Science) (26.08.2022)

by Shaw, Alexander G, Troman, Catherine, Akello, Joyce Odeke, O'Reilly, Kathleen M, Gauld, Jillian, Grow, Stephanie, Grassly, Nicholas, Steele, Duncan, Blazes, David, Kumar, Supriya
Published in Nature medicine (01.09.2023)

by Sutcliffe, Steven G, Kraemer, Susanne A, Ellmen, Isaac, Knapp, Jennifer J, Overton, Alyssa K, Nash, Delaney, Nissimov, Jozef I, Charles, Trevor C, Dreifuss, David, Topolsky, Ivan, Baykal, Pelin I, Fuhrmann, Lara, Jablonski, Kim P, Beerenwinkel, Niko, Levy, Joshua I, Olabode, Abayomi S, Becker, Devan G, Gugan, Gopi, Brintnell, Erin, Poon, Art F Y, Valieris, Renan, Drummond, Rodrigo D, Defelicibus, Alexandre, Dias-Neto, Emmanuel, Rosales, Rafael A, Tojal da Silva, Israel, Orfanou, Aspasia, Psomopoulos, Fotis, Pechlivanis, Nikolaos, Pipes, Lenore, Chen, Zihao, Baaijens, Jasmijn A, Baym, Michael, Shapiro, B Jesse
Published in Microbial genomics (01.05.2024)

by De Hoff, Peter, Humphrey, Greg, Birmingham, Amanda, Jepsen, Kristen, Farmer, Sawyer, Tubb, Helena M., Valles, Tommy, Tribelhorn, Caitlin E., Tsai, Rebecca, Aigner, Stefan, Sathe, Shashank, Henson, Benjamin, Mark, Adam M., Hakim, Abbas, Baer, Nathan A., Barber, Tom, Belda-Ferre, Pedro, Chacón, Marisol, Cheung, Willi, Eisner, Emily R., Lastrella, Alma L., Lawrence, Elijah S., Marotz, Clarisse A., Ngo, Toan T., Plascencia, Ashley, Salido, Rodolfo A., Seaver, Phoebe, Smoot, Elizabeth W., Scioscia, Angela L., Satterlund, Alysson M., Simmons, Elizabeth H., Abelman, Dismas B., Brenner, David, Bruner, Judith C., Buckley, Anne, Ellison, Michael, Gattas, Jeffrey, Gonias, Steven L., Hale, Matt, Hawkins, Faith, Ikeda, Lydia, Jhaveri, Hemlata, Johnson, Ted, Kellen, Vince, Kremer, Brendan, McLawhon, Ronald W., Ouillet, Pierre, Park, Daniel, Pradenas, Allorah, Reed, Sharon, Riggs, Lindsay, Sanders, Alison, Sollenberger, Bradley, Song, Angela, White, Benjamin, Winbush, Terri, Aceves, Christine M., Anderson, Catelyn, Gangavarapu, Karthik, Kurzban, Ezra, Lee, Justin, Matteson, Nathaniel L., Parker, Edyth, Perkins, Sarah A., Ramesh, Karthik S., Robles-Sikisaka, Refugio, Schwab, Madison A., Spencer, Emily, Wohl, Shirlee, Nicholson, Laura, Hobbs, Charlotte A., Bakhtar, Omid, Harding, Aaron, Mendoza, Art, Bolze, Alexandre, Becker, David, Cirulli, Elizabeth T., Isaksson, Magnus, Washington, Nicole L., Malone, John D., Schafer, Ashleigh Murphy, Gurfield, Nikos, Stous, Sarah, Fielding-Miller, Rebecca, Gaines, Tommi, Anderson, Cheryl, Schooley, Robert, Austin, Brett, Lee, William, McDonald, Eric, Yu, Alexander T., Zeller, Mark, Fisch, Kathleen M., Longhurst, Christopher, Maysent, Patty, Khosla, Pradeep K., Laurent, Louise C., Yeo, Gene W., Andersen, Kristian G., Knight, Rob
Published in Nature (London) (01.09.2022)

by Pekar, Jonathan E, Magee, Andrew, Parker, Edyth, Moshiri, Niema, Izhikevich, Katherine, Havens, Jennifer L, Gangavarapu, Karthik, Malpica Serrano, Lorena Mariana, Crits-Christoph, Alexander, Matteson, Nathaniel L, Zeller, Mark, Levy, Joshua I, Wang, Jade C, Hughes, Scott, Lee, Jungmin, Park, Heedo, Park, Man-Seong, Ching Zi Yan, Katherine, Lin, Raymond Tzer Pin, Mat Isa, Mohd Noor, Noor, Yusuf Muhammad, Vasylyeva, Tetyana I, Garry, Robert F, Holmes, Edward C, Rambaut, Andrew, Suchard, Marc A, Andersen, Kristian G, Worobey, Michael, Wertheim, Joel O
Published in Science (American Association for the Advancement of Science) (26.08.2022)

by Gangavarapu, Karthik, Latif, Alaa Abdel, Mullen, Julia L, Alkuzweny, Manar, Hufbauer, Emory, Tsueng, Ginger, Haag, Emily, Zeller, Mark, Aceves, Christine M, Zaiets, Karina, Cano, Marco, Zhou, Jerry, Qian, Zhongchao, Sattler, Rachel, Matteson, Nathaniel L, Levy, Joshua I, Lee, Raphael Tc, Freitas, Lucas, Maurer-Stroh, Sebastian, Suchard, Marc A, Wu, Chunlei, Su, Andrew I, Andersen, Kristian G, Hughes, Laura D
Published in Research square (28.06.2022)

by Matteson, Nathaniel L, Hassler, Gabriel W, Kurzban, Ezra, Schwab, Madison A, Perkins, Sarah A, Gangavarapu, Karthik, Levy, Joshua I, Parker, Edyth, Hakim, Abbas, Cheung, Willi, Castro-Martinez, Anelizze, Veder, Anthony, Rivera, Ariana, Holmes, Jacqueline, Wilson, Jedediah, Plascencia, Ashley, Lawrence, Elijah S, Smoot, Elizabeth W, Eisner, Emily R, Tsai, Rebecca, Chacón, Marisol, Baer, Nathan A, Seaver, Phoebe, Salido, Rodolfo A, Aigner, Stefan, Barber, Tom, Ostrander, Tyler, Fielding-Miller, Rebecca, Simmons, Elizabeth H, Zazueta, Oscar E, Serafin-Higuera, Idanya, Sanchez-Alavez, Manuel, Moreno-Camacho, Jose L, García-Gil, Abraham, Murphy Schafer, Ashleigh R, McDonald, Eric, Corrigan, Jeremy, Malone, John D, Stous, Sarah, Moshiri, Niema, Weiss, Alana, Anderson, Catelyn, Aceves, Christine M, Spencer, Emily G, Hufbauer, Emory C, Lee, Justin J, King, Alison J, Ramesh, Karthik S, Saucedo, Kieran, Robles-Sikisaka, Refugio, Fisch, Kathleen M, Gonias, Steven L, Birmingham, Amanda, McDonald, Daniel, Karthikeyan, Smruthi, Martin, Natasha K, Schooley, Robert T, Negrete, Agustin J, Reyna, Horacio J, Chavez, Jose R, Becker, David, Isaksson, Magnus, Washington, Nicole L, Lee, William, Garfein, Richard S, Luna-Ruiz Esparza, Marco A, Alcántar-Fernández, Jonathan, Henson, Benjamin, Jepsen, Kristen, Olivares-Flores, Beatriz, Lopez-Martínez, Irma, Ramírez-González, José E, Kingsmore, Stephen F, Sanders, Alison, Pradenas, Allorah, White, Benjamin, Matthews, Gary, Hale, Matt, McLawhon, Ronald W, Reed, Sharon L, Winbush, Terri, McHardy, Ian H, Fielding, Russel A, Nicholson, Laura, Quigley, Michael M, Harding, Aaron, Mendoza, Art, Bakhtar, Omid, Gonzalez Ibarra, Martin, Robles Ibarra, Luis C, Arellano Vera, Betsy J, Knight, Rob, Laurent, Louise C, Wertheim, Joel O, Ji, Xiang, Worobey, Michael, Andersen, Kristian G, Campos-Romero, Abraham, Wohl, Shirlee, Zeller, Mark
Published in Cell (21.12.2023)