Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees
Subramanian, Balakrishnan, Gao, Shenghan, Lercher, Martin J, Hu, Songnian, Chen, Wei-Hua
Published in Nucleic acids research (02.07.2019)
Published in Nucleic acids research (02.07.2019)
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Journal Article
Deep learning allows genome-scale prediction of Michaelis constants from structural features
Kroll, Alexander, Engqvist, Martin K M, Heckmann, David, Lercher, Martin J
Published in PLoS biology (19.10.2021)
Published in PLoS biology (19.10.2021)
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Journal Article
A general model to predict small molecule substrates of enzymes based on machine and deep learning
Kroll, Alexander, Ranjan, Sahasra, Engqvist, Martin K M, Lercher, Martin J
Published in Nature communications (15.05.2023)
Published in Nature communications (15.05.2023)
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Journal Article
Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models
Heckmann, David, Lloyd, Colton J, Mih, Nathan, Ha, Yuanchi, Zielinski, Daniel C, Haiman, Zachary B, Desouki, Abdelmoneim Amer, Lercher, Martin J, Palsson, Bernhard O
Published in Nature communications (07.12.2018)
Published in Nature communications (07.12.2018)
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Journal Article
EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
Zhang, Huangkai, Gao, Shenghan, Lercher, Martin J, Hu, Songnian, Chen, Wei-Hua
Published in Nucleic acids research (01.07.2012)
Published in Nucleic acids research (01.07.2012)
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Journal Article
The protein translation machinery is expressed for maximal efficiency in Escherichia coli
Hu, Xiao-Pan, Dourado, Hugo, Schubert, Peter, Lercher, Martin J.
Published in Nature communications (16.10.2020)
Published in Nature communications (16.10.2020)
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Journal Article
Turnover number predictions for kinetically uncharacterized enzymes using machine and deep learning
Kroll, Alexander, Rousset, Yvan, Hu, Xiao-Pan, Liebrand, Nina A, Lercher, Martin J
Published in Nature communications (12.07.2023)
Published in Nature communications (12.07.2023)
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Journal Article
Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth
Dourado, Hugo, Liebermeister, Wolfram, Ebenhöh, Oliver, Lercher, Martin J
Published in PLoS computational biology (01.06.2023)
Published in PLoS computational biology (01.06.2023)
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Journal Article
Energy efficiency trade-offs drive nucleotide usage in transcribed regions
Chen, Wei-Hua, Lu, Guanting, Bork, Peer, Hu, Songnian, Lercher, Martin J
Published in Nature communications (21.04.2016)
Published in Nature communications (21.04.2016)
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Journal Article
Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote
Schönknecht, Gerald, Chen, Wei-Hua, Ternes, Chad M., Barbier, Guillaume G., Shrestha, Roshan P., Stanke, Mario, Bräutigam, Andrea, Baker, Brett J., Banfield, Jillian F., Garavito, R. Michael, Carr, Kevin, Wilkerson, Curtis, Rensing, Stefan A., Gagneul, David, Dickenson, Nicholas E., Oesterhelt, Christine, Lercher, Martin J., Weber, Andreas P. M.
Published in Science (American Association for the Advancement of Science) (08.03.2013)
Published in Science (American Association for the Advancement of Science) (08.03.2013)
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Journal Article
Modeling photosynthetic resource allocation connects physiology with evolutionary environments
Sundermann, Esther M., Lercher, Martin J., Heckmann, David
Published in Scientific reports (05.08.2021)
Published in Scientific reports (05.08.2021)
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