Structure-based protein function prediction using graph convolutional networks
Gligorijević, Vladimir, Renfrew, P Douglas, Kosciolek, Tomasz, Leman, Julia Koehler, Berenberg, Daniel, Vatanen, Tommi, Chandler, Chris, Taylor, Bryn C, Fisk, Ian M, Vlamakis, Hera, Xavier, Ramnik J, Knight, Rob, Cho, Kyunghyun, Bonneau, Richard
Published in Nature communications (26.05.2021)
Published in Nature communications (26.05.2021)
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Journal Article
Recent Advances in NMR Protein Structure Prediction with ROSETTA
Koehler Leman, Julia, Künze, Georg
Published in International journal of molecular sciences (25.04.2023)
Published in International journal of molecular sciences (25.04.2023)
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Journal Article
Specificity and Speed: Tethered Photopharmacology
Leippe, Philipp, Koehler Leman, Julia, Trauner, Dirk
Published in Biochemistry (Easton) (03.10.2017)
Published in Biochemistry (Easton) (03.10.2017)
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Journal Article
Computational modeling of membrane proteins
Koehler Leman, Julia, Ulmschneider, Martin B., Gray, Jeffrey J.
Published in Proteins, structure, function, and bioinformatics (01.01.2015)
Published in Proteins, structure, function, and bioinformatics (01.01.2015)
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Journal Article
Sequence-structure-function relationships in the microbial protein universe
Koehler Leman, Julia, Szczerbiak, Pawel, Renfrew, P Douglas, Gligorijevic, Vladimir, Berenberg, Daniel, Vatanen, Tommi, Taylor, Bryn C, Chandler, Chris, Janssen, Stefan, Pataki, Andras, Carriero, Nick, Fisk, Ian, Xavier, Ramnik J, Knight, Rob, Bonneau, Richard, Kosciolek, Tomasz
Published in Nature communications (26.04.2023)
Published in Nature communications (26.04.2023)
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Journal Article
Docking cholesterol to integral membrane proteins with Rosetta
Marlow, Brennica, Kuenze, Georg, Meiler, Jens, Koehler Leman, Julia
Published in PLoS computational biology (01.03.2023)
Published in PLoS computational biology (01.03.2023)
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Journal Article
Statistically derived asymmetric membrane potentials from α-helical and β-barrel membrane proteins
Koehler Leman, Julia, Bonneau, Richard, Ulmschneider, Martin B
Published in Scientific reports (13.03.2018)
Published in Scientific reports (13.03.2018)
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Journal Article
Better together: Elements of successful scientific software development in a distributed collaborative community
Koehler Leman, Julia, Weitzner, Brian D, Renfrew, P Douglas, Lewis, Steven M, Moretti, Rocco, Watkins, Andrew M, Mulligan, Vikram Khipple, Lyskov, Sergey, Adolf-Bryfogle, Jared, Labonte, Jason W, Krys, Justyna, Bystroff, Christopher, Schief, William, Gront, Dominik, Schueler-Furman, Ora, Baker, David, Bradley, Philip, Dunbrack, Roland, Kortemme, Tanja, Leaver-Fay, Andrew, Strauss, Charlie E M, Meiler, Jens, Kuhlman, Brian, Gray, Jeffrey J, Bonneau, Richard
Published in PLoS computational biology (04.05.2020)
Published in PLoS computational biology (04.05.2020)
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Journal Article
An Integrated Framework Advancing Membrane Protein Modeling and Design
Alford, Rebecca F, Koehler Leman, Julia, Weitzner, Brian D, Duran, Amanda M, Tilley, Drew C, Elazar, Assaf, Gray, Jeffrey J
Published in PLoS computational biology (01.09.2015)
Published in PLoS computational biology (01.09.2015)
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Journal Article
Expanding the toolkit for membrane protein modeling in Rosetta
Koehler Leman, Julia, Mueller, Benjamin K, Gray, Jeffrey J
Published in Bioinformatics (Oxford, England) (01.03.2017)
Published in Bioinformatics (Oxford, England) (01.03.2017)
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Journal Article
Computational Prediction of the Heterodimeric and Higher-Order Structure of gpE1/gpE2 Envelope Glycoproteins Encoded by Hepatitis C Virus
Freedman, Holly, Logan, Michael R, Hockman, Darren, Koehler Leman, Julia, Law, John Lok Man, Houghton, Michael
Published in Journal of virology (15.04.2017)
Published in Journal of virology (15.04.2017)
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Journal Article
Capturing conformational States in proteins using sparse paramagnetic NMR data
Pilla, Kala Bharath, Leman, Julia Koehler, Otting, Gottfried, Huber, Thomas
Published in PloS one (18.05.2015)
Published in PloS one (18.05.2015)
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Journal Article
Classification of the Molecular Defects Associated with Pathogenic Variants of the SLC6A8 Creatine Transporter
Salazar, Martin D, Zelt, Nathan B, Saldivar, Robert, Kuntz, Charles P, Chen, Sheng, Penn, Wesley D, Bonneau, Richard, Koehler Leman, Julia, Schlebach, Jonathan P
Published in Biochemistry (Easton) (07.04.2020)
Published in Biochemistry (Easton) (07.04.2020)
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Journal Article
A survey of conformational and energetic changes in G protein signaling
D. Lokits, Alyssa, Koehler Leman, Julia, E. Kitko, Kristina, S. Alexander, Nathan, E. Hamm, Heidi, Meiler, Jens
Published in AIMS biophysics (01.01.2015)
Published in AIMS biophysics (01.01.2015)
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Journal Article