Wastewater monitoring outperforms case numbers as a tool to track COVID-19 incidence dynamics when test positivity rates are high
Fernandez-Cassi, Xavier, Scheidegger, Andreas, Bänziger, Carola, Cariti, Federica, Tuñas Corzon, Alex, Ganesanandamoorthy, Pravin, Lemaitre, Joseph C., Ort, Christoph, Julian, Timothy R., Kohn, Tamar
Published in Water research (Oxford) (15.07.2021)
Published in Water research (Oxford) (15.07.2021)
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Journal Article
Range of reproduction number estimates for COVID-19 spread
Pasetto, Damiano, Lemaitre, Joseph C., Bertuzzo, Enrico, Gatto, Marino, Rinaldo, Andrea
Published in Biochemical and biophysical research communications (29.01.2021)
Published in Biochemical and biophysical research communications (29.01.2021)
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Journal Article
Near real-time forecasting for cholera decision making in Haiti after Hurricane Matthew
Pasetto, Damiano, Finger, Flavio, Camacho, Anton, Grandesso, Francesco, Cohuet, Sandra, Lemaitre, Joseph C, Azman, Andrew S, Luquero, Francisco J, Bertuzzo, Enrico, Rinaldo, Andrea
Published in PLoS computational biology (16.05.2018)
Published in PLoS computational biology (16.05.2018)
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Journal Article
A scenario modeling pipeline for COVID-19 emergency planning
Lemaitre, Joseph C, Grantz, Kyra H, Kaminsky, Joshua, Meredith, Hannah R, Truelove, Shaun A, Lauer, Stephen A, Keegan, Lindsay T, Shah, Sam, Wills, Josh, Kaminsky, Kathryn, Perez-Saez, Javier, Lessler, Justin, Lee, Elizabeth C
Published in Scientific reports (06.04.2021)
Published in Scientific reports (06.04.2021)
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Journal Article
flepiMoP: The evolution of a flexible infectious disease modeling pipeline during the COVID-19 pandemic
Lemaitre, Joseph C., Loo, Sara L., Kaminsky, Joshua, Lee, Elizabeth C., McKee, Clifton, Smith, Claire, Jung, Sung-mok, Sato, Koji, Carcelen, Erica, Hill, Alison, Lessler, Justin, Truelove, Shaun
Published in Epidemics (01.06.2024)
Published in Epidemics (01.06.2024)
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Journal Article
Achieving coordinated national immunity and cholera elimination in Haiti through vaccination: a modelling study
Lee, Elizabeth C, Chao, Dennis L, Lemaitre, Joseph C, Matrajt, Laura, Pasetto, Damiano, Perez-Saez, Javier, Finger, Flavio, Rinaldo, Andrea, Sugimoto, Jonathan D, Halloran, M Elizabeth, Longini, Jr, Ira M, Ternier, Ralph, Vissieres, Kenia, Azman, Andrew S, Lessler, Justin, Ivers, Louise C
Published in The Lancet global health (01.08.2020)
Published in The Lancet global health (01.08.2020)
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Journal Article
Impact of SARS-CoV-2 vaccination of children ages 5–11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021–March 2022: a multi-model study
Borchering, Rebecca K., Mullany, Luke C., Howerton, Emily, Chinazzi, Matteo, Smith, Claire P., Qin, Michelle, Reich, Nicholas G., Contamin, Lucie, Levander, John, Kerr, Jessica, Espino, J., Hochheiser, Harry, Lovett, Kaitlin, Kinsey, Matt, Tallaksen, Kate, Wilson, Shelby, Shin, Lauren, Lemaitre, Joseph C., Hulse, Juan Dent, Kaminsky, Joshua, Lee, Elizabeth C., Hill, Alison L., Davis, Jessica T., Mu, Kunpeng, Xiong, Xinyue, Pastore y Piontti, Ana, Vespignani, Alessandro, Srivastava, Ajitesh, Porebski, Przemyslaw, Venkatramanan, Srini, Adiga, Aniruddha, Lewis, Bryan, Klahn, Brian, Outten, Joseph, Hurt, Benjamin, Chen, Jiangzhuo, Mortveit, Henning, Wilson, Amanda, Marathe, Madhav, Hoops, Stefan, Bhattacharya, Parantapa, Machi, Dustin, Chen, Shi, Paul, Rajib, Janies, Daniel, Thill, Jean-Claude, Galanti, Marta, Yamana, Teresa, Pei, Sen, Shaman, Jeffrey, España, Guido, Cavany, Sean, Moore, Sean, Perkins, Alex, Healy, Jessica M., Slayton, Rachel B., Johansson, Michael A., Biggerstaff, Matthew, Shea, Katriona, Truelove, Shaun A., Runge, Michael C., Viboud, Cécile, Lessler, Justin
Published in Lancet Regional Health - Americas (Online) (01.01.2023)
Published in Lancet Regional Health - Americas (Online) (01.01.2023)
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Journal Article
Effect of specific non-pharmaceutical intervention policies on SARS-CoV-2 transmission in the counties of the United States
Yang, Bingyi, Huang, Angkana T, Garcia-Carreras, Bernardo, Hart, William E, Staid, Andrea, Hitchings, Matt D T, Lee, Elizabeth C, Howe, Chanelle J, Grantz, Kyra H, Wesolowksi, Amy, Lemaitre, Joseph Chadi, Rattigan, Susan, Moreno, Carlos, Borgert, Brooke A, Dale, Celeste, Quigley, Nicole, Cummings, Andrew, McLorg, Alizée, LoMonaco, Kaelene, Schlossberg, Sarah, Barron-Kraus, Drew, Shrock, Harrison, Lessler, Justin, Laird, Carl D, Cummings, Derek A T
Published in Nature communications (11.06.2021)
Published in Nature communications (11.06.2021)
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Journal Article
Rainfall as a driver of epidemic cholera: Comparative model assessments of the effect of intra-seasonal precipitation events
Lemaitre, Joseph, Pasetto, Damiano, Perez-Saez, Javier, Sciarra, Carla, Wamala, Joseph Francis, Rinaldo, Andrea
Published in Acta tropica (01.02.2019)
Published in Acta tropica (01.02.2019)
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Journal Article
Impact of SARS-CoV-2 vaccination of children ages 5-11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: a multi-model study
Borchering, Rebecca K, Mullany, Luke C, Howerton, Emily, Chinazzi, Matteo, Smith, Claire P, Qin, Michelle, Reich, Nicholas G, Contamin, Lucie, Levander, John, Kerr, Jessica, Espino, J, Hochheiser, Harry, Lovett, Kaitlin, Kinsey, Matt, Tallaksen, Kate, Wilson, Shelby, Shin, Lauren, Lemaitre, Joseph C, Hulse, Juan Dent, Kaminsky, Joshua, Lee, Elizabeth C, Davis, Jessica T, Mu, Kunpeng, Xiong, Xinyue, Piontti, Ana Pastore Y, Vespignani, Alessandro, Srivastava, Ajitesh, Porebski, Przemyslaw, Venkatramanan, Srini, Adiga, Aniruddha, Lewis, Bryan, Klahn, Brian, Outten, Joseph, Hurt, Benjamin, Chen, Jiangzhuo, Mortveit, Henning, Wilson, Amanda, Marathe, Madhav, Hoops, Stefan, Bhattacharya, Parantapa, Machi, Dustin, Chen, Shi, Paul, Rajib, Janies, Daniel, Thill, Jean-Claude, Galanti, Marta, Yamana, Teresa, Pei, Sen, Shaman, Jeffrey, Espana, Guido, Cavany, Sean, Moore, Sean, Perkins, Alex, Healy, Jessica M, Slayton, Rachel B, Johansson, Michael A, Biggerstaff, Matthew, Shea, Katriona, Truelove, Shaun A, Runge, Michael C, Viboud, Cécile, Lessler, Justin
Published in medRxiv : the preprint server for health sciences (10.03.2022)
Published in medRxiv : the preprint server for health sciences (10.03.2022)
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Journal Article
Projected resurgence of COVID-19 in the United States in July-December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination
Truelove, Shaun, Smith, Claire P, Qin, Michelle, Mullany, Luke C, Borchering, Rebecca K, Lessler, Justin, Shea, Katriona, Howerton, Emily, Contamin, Lucie, Levander, John, Salerno, Jessica, Hochheiser, Harry, Kinsey, Matt, Tallaksen, Kate, Wilson, Shelby, Shin, Lauren, Rainwater-Lovett, Kaitlin, Lemaitre, Joseph C, Dent, Juan, Kaminsky, Joshua, Lee, Elizabeth C, Perez-Saez, Javier, Hill, Alison, Karlen, Dean, Chinazzi, Matteo, Davis, Jessica T, Mu, Kunpeng, Xiong, Xinyue, Piontti, Ana Pastore Y, Vespignani, Alessandro, Srivastava, Ajitesh, Porebski, Przemyslaw, Venkatramanan, Srinivasan, Adiga, Aniruddha, Lewis, Bryan, Klahn, Brian, Outten, Joseph, Schlitt, James, Corbett, Patrick, Telionis, Pyrros Alexander, Wang, Lijing, Peddireddy, Akhil Sai, Hurt, Benjamin, Chen, Jiangzhuo, Vullikanti, Anil, Marathe, Madhav, Hoops, Stefan, Bhattacharya, Parantapa, Machi, Dustin, Chen, Shi, Paul, Rajib, Janies, Daniel, Thill, Jean-Claude, Galanti, Marta, Yamana, Teresa, Pei, Sen, Shaman, Jeffrey, Reich, Nicholas G, Healy, Jessica M, Slayton, Rachel B, Biggerstaff, Matthew, Johansson, Michael A, Runge, Michael C, Viboud, Cécile
Published in medRxiv : the preprint server for health sciences (02.09.2021)
Published in medRxiv : the preprint server for health sciences (02.09.2021)
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Journal Article
Distributed graph-based convoy control for networked intelligent vehicles
Marjovi, Ali, Vasic, Milos, Lemaitre, Joseph, Martinoli, Alcherio
Published in 2015 IEEE Intelligent Vehicles Symposium (IV) (01.06.2015)
Published in 2015 IEEE Intelligent Vehicles Symposium (IV) (01.06.2015)
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Conference Proceeding
Cloud base height estimation using high-resolution whole sky imagers
Savoy, Florian M., Lemaitre, Joseph C., Dev, Soumyabrata, Yee Hui Lee, Winkler, Stefan
Published in 2015 IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (01.07.2015)
Published in 2015 IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (01.07.2015)
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Conference Proceeding
Title evaluation of FluSight influenza forecasting in the 2021-22 and 2022-23 seasons with a new target laboratory-confirmed influenza hospitalizations
Mathis, Sarabeth M, Webber, Alexander E, León, Tomás M, Murray, Erin L, Sun, Monica, White, Lauren A, Brooks, Logan C, Green, Alden, Hu, Addison J, Rosenfeld, Roni, Tibshirani, Ryan J, McDonald, Daniel J, Kandula, Sasikiran, Pei, Sen, Yaari, Rami, Yamana, Teresa K, Shaman, Jeffrey, Gururajan, Gautham, Kamarthi, Harshavardhan, Prakash, B Aditya, Raman, Rishi, Zhao, Zhiyuan, Meiyappan, Akilan, Omar, Shalina, Baccam, Prasith, Gurung, Heidi L, Suchoski, Brad T, Stage, Steve A, Ajelli, Marco, Kummer, Allisandra G, Litvinova, Maria, Ventura, Paulo C, Wadsworth, Spencer, Carcelen, Erica, Loo, Sara L, McKee, Clifton D, Sato, Koji, Smith, Claire, Truelove, Shaun, Jung, Sung-Mok, Lemaitre, Joseph C, Lessler, Justin, McAndrew, Thomas, Ye, Wenxuan, Bosse, Nikos, Hlavacek, William S, Lin, Yen Ting, Mallela, Abhishek, Gibson, Graham C, Chen, Ye, Lamm, Shelby M, Lee, Jaechoul, Perofsky, Amanda C, Viboud, Cécile, Clemente, Leonardo, Lu, Fred, Meyer, Austin G, Santillana, Mauricio, Davis, Jessica T, Mu, Kunpeng, Pastore Y Piontti, Ana, Vespignani, Alessandro, Xiong, Xinyue, Ben-Nun, Michal, Riley, Pete, Turtle, James, Hulme-Lowe, Chis, Nagraj, V P, Turner, Stephen D, Williams, Desiree, Basu, Avranil, Drake, John M, Fox, Spencer J, Suez, Ehsan, Cojocaru, Monica G, Thommes, Edward W, Cramer, Estee Y, Gerding, Aaron, Stark, Ariane, Ray, Evan L, Reich, Nicholas G, Shandross, Li, Wattanachit, Nutcha, Wang, Yijin, Aawar, Majd Al, Srivastava, Ajitesh, Meyers, Lauren A, Adiga, Aniruddha, Hurt, Benjamin, Kaur, Gursharn, Lewis, Bryan L, Marathe, Madhav, Venkatramanan, Srinivasan, Butler, Patrick, Farabow, Andrew, Ramakrishnan, Naren, Muralidhar, Nikhil, Reed, Carrie, Biggerstaff, Matthew, Borchering, Rebecca K
Published in Nature communications (26.07.2024)
Published in Nature communications (26.07.2024)
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Journal Article
Evaluation of FluSight influenza forecasting in the 2021–22 and 2022–23 seasons with a new target laboratory-confirmed influenza hospitalizations
Mathis, Sarabeth M., Webber, Alexander E., León, Tomás M., Murray, Erin L., Sun, Monica, White, Lauren A., Brooks, Logan C., Green, Alden, Hu, Addison J., Rosenfeld, Roni, Tibshirani, Ryan J., McDonald, Daniel J., Kandula, Sasikiran, Pei, Sen, Yaari, Rami, Yamana, Teresa K., Shaman, Jeffrey, Gururajan, Gautham, Kamarthi, Harshavardhan, Prakash, B. Aditya, Raman, Rishi, Zhao, Zhiyuan, Rodríguez, Alexander, Meiyappan, Akilan, Omar, Shalina, Baccam, Prasith, Gurung, Heidi L., Suchoski, Brad T., Stage, Steve A., Ajelli, Marco, Kummer, Allisandra G., Litvinova, Maria, Ventura, Paulo C., Wadsworth, Spencer, Niemi, Jarad, Carcelen, Erica, Loo, Sara L., McKee, Clifton D., Sato, Koji, Smith, Claire, Truelove, Shaun, Lemaitre, Joseph C., Lessler, Justin, McAndrew, Thomas, Ye, Wenxuan, Bosse, Nikos, Hlavacek, William S., Lin, Yen Ting, Mallela, Abhishek, Gibson, Graham C., Chen, Ye, Lamm, Shelby M., Lee, Jaechoul, Perofsky, Amanda C., Clemente, Leonardo, Lu, Fred, Meyer, Austin G., Santillana, Mauricio, Chinazzi, Matteo, Davis, Jessica T., Mu, Kunpeng, Pastore y Piontti, Ana, Vespignani, Alessandro, Xiong, Xinyue, Ben-Nun, Michal, Riley, Pete, Turtle, James, Hulme-Lowe, Chis, Jessa, Shakeel, Turner, Stephen D., Williams, Desiree, Basu, Avranil, Drake, John M., Fox, Spencer J., Suez, Ehsan, Cojocaru, Monica G., Thommes, Edward W., Cramer, Estee Y., Gerding, Aaron, Stark, Ariane, Ray, Evan L., Reich, Nicholas G., Wang, Yijin, Zorn, Martha W., Aawar, Majd Al, Srivastava, Ajitesh, Meyers, Lauren A., Adiga, Aniruddha, Hurt, Benjamin, Kaur, Gursharn, Lewis, Bryan L., Marathe, Madhav, Venkatramanan, Srinivasan, Butler, Patrick, Farabow, Andrew, Ramakrishnan, Naren, Muralidhar, Nikhil, Reed, Carrie, Biggerstaff, Matthew, Borchering, Rebecca K.
Published in Nature communications (26.07.2024)
Published in Nature communications (26.07.2024)
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Journal Article
Inferring the proportion of undetected cholera infections from serological and clinical surveillance in an immunologically naive population
Finger, Flavio, Lemaitre, Joseph, Juin, Stanley, Jackson, Brendan, Funk, Sebastian, Lessler, Justin, Mintz, Eric, Dely, Patrick, Boncy, Jacques, Azman, Andrew S
Published in medRxiv : the preprint server for health sciences (01.11.2023)
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Published in medRxiv : the preprint server for health sciences (01.11.2023)
Journal Article
Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub
Jung, Sung-Mok, Loo, Sara L, Howerton, Emily, Contamin, Lucie, Smith, Claire P, Carcelén, Erica C, Yan, Katie, Bents, Samantha J, Levander, John, Espino, Jessi, Lemaitre, Joseph C, Sato, Koji, McKee, Clifton D, Hill, Alison L, Chinazzi, Matteo, Davis, Jessica T, Mu, Kunpeng, Vespignani, Alessandro, Rosenstrom, Erik T, Rodriguez-Cartes, Sebastian A, Ivy, Julie S, Mayorga, Maria E, Swann, Julie L, España, Guido, Cavany, Sean, Moore, Sean M, Perkins, T Alex, Chen, Shi, Paul, Rajib, Janies, Daniel, Thill, Jean-Claude, Srivastava, Ajitesh, Aawar, Majd Al, Bi, Kaiming, Bandekar, Shraddha Ramdas, Bouchnita, Anass, Fox, Spencer J, Meyers, Lauren Ancel, Porebski, Przemyslaw, Venkatramanan, Srini, Adiga, Aniruddha, Hurt, Benjamin, Klahn, Brian, Outten, Joseph, Chen, Jiangzhuo, Mortveit, Henning, Wilson, Amanda, Hoops, Stefan, Bhattacharya, Parantapa, Machi, Dustin, Vullikanti, Anil, Lewis, Bryan, Marathe, Madhav, Hochheiser, Harry, Runge, Michael C, Shea, Katriona, Truelove, Shaun, Viboud, Cécile, Lessler, Justin
Published in PLoS medicine (17.04.2024)
Published in PLoS medicine (17.04.2024)
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Journal Article
Challenges of COVID-19 Case Forecasting in the US, 2020-2021
Lopez, Velma K, Cramer, Estee Y, Pagano, Robert, Drake, John M, O'Dea, Eamon B, Adee, Madeline, Ayer, Turgay, Chhatwal, Jagpreet, Dalgic, Ozden O, Ladd, Mary A, Linas, Benjamin P, Mueller, Peter P, Xiao, Jade, Bracher, Johannes, Castro Rivadeneira, Alvaro J, Gerding, Aaron, Gneiting, Tilmann, Jayawardena, Dasuni, Kanji, Abdul H, Le, Khoa, Mühlemann, Anja, Niemi, Jarad, Ray, Evan L, Stark, Ariane, Wang, Yijin, Wattanachit, Nutcha, Zorn, Martha W, Pei, Sen, Shaman, Jeffrey, Yamana, Teresa K, Tarasewicz, Samuel R, Wilson, Daniel J, Baccam, Sid, Gurung, Heidi, Stage, Steve, Suchoski, Brad, Gao, Lei, Gu, Zhiling, Kim, Myungjin, Li, Xinyi, Wang, Lily, Wang, Yueying, Yu, Shan, Gardner, Lauren, Jindal, Sonia, Marshall, Maximilian, Nixon, Kristen, Dent, Juan, Kaminsky, Joshua, Lee, Elizabeth C, Lemaitre, Joseph C, Lessler, Justin, Smith, Claire P, Truelove, Shaun, Mullany, Luke C, Rainwater-Lovett, Kaitlin, Shin, Lauren, Tallaksen, Katharine, Wilson, Shelby, Karlen, Dean, Fairchild, Geoffrey, Michaud, Isaac, Osthus, Dave, Bian, Jiang, Cao, Wei, Lavista Ferres, Juan, Liu, Tie-Yan, Xie, Xing, Zhang, Shun, Zheng, Shun, Chinazzi, Matteo, Davis, Jessica T, Mu, Kunpeng, Pastore Y Piontti, Ana, Vespignani, Alessandro, Xiong, Xinyue, Walraven, Robert, Chen, Jinghui, Gu, Quanquan, Wang, Lingxiao, Xu, Pan, Zhang, Weitong, Zou, Difan, Gibson, Graham Casey, Sheldon, Daniel, Srivastava, Ajitesh, Adiga, Aniruddha, Hurt, Benjamin, Kaur, Gursharn, Lewis, Bryan, Marathe, Madhav, Peddireddy, Akhil Sai, Porebski, Przemyslaw, Venkatramanan, Srinivasan, Wang, Lijing, Walker, Jo W, Webber, Alexander E, Slayton, Rachel B, Biggerstaff, Matthew, Johansson, Michael A
Published in PLoS computational biology (06.05.2024)
Published in PLoS computational biology (06.05.2024)
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Journal Article