Gut microbiota and tacrolimus dosing in kidney transplantation
Lee, John R, Muthukumar, Thangamani, Dadhania, Darshana, Taur, Ying, Jenq, Robert R, Toussaint, Nora C, Ling, Lilan, Pamer, Eric, Suthanthiran, Manikkam
Published in PloS one (27.03.2015)
Published in PloS one (27.03.2015)
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Gut commensal microbiota and decreased risk for Enterobacteriaceae bacteriuria and urinary tract infection
Magruder, Matthew, Edusei, Emmanuel, Zhang, Lisa, Albakry, Shady, Satlin, Michael J, Westblade, Lars F, Malha, Line, Sze, Christina, Lubetzky, Michelle, Dadhania, Darshana M, Lee, John R
Published in Gut microbes (09.11.2020)
Published in Gut microbes (09.11.2020)
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A quantitative comparison of urine centrifugation and filtration for the isolation and analysis of urinary nucleic acid biomarkers
Djomnang, Liz-Audrey Kounatse, Li, Carol, Mzava, Omary, Cheng, Alexandre Pellan, Chang, Adrienne, Lenz, Joan Sesing, Suthanthiran, Manikkam, Lee, John R., Dadhania, Darshana M., De Vlaminck, Iwijn
Published in Scientific reports (13.05.2024)
Published in Scientific reports (13.05.2024)
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Journal Article
Detection of infiltrating fibroblasts by single-cell transcriptomics in human kidney allografts
Suryawanshi, Hemant, Yang, Hua, Lubetzky, Michelle, Morozov, Pavel, Lagman, Mila, Thareja, Gaurav, Alonso, Alicia, Li, Carol, Snopkowski, Catherine, Belkadi, Aziz, Mueller, Franco B, Lee, John R, Dadhania, Darshana M, Salvatore, Steven P, Seshan, Surya V, Sharma, Vijay K, Suhre, Karsten, Suthanthiran, Manikkam, Tuschl, Thomas, Muthukumar, Thangamani
Published in PloS one (03.06.2022)
Published in PloS one (03.06.2022)
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A metagenomic DNA sequencing assay that is robust against environmental DNA contamination
Mzava, Omary, Cheng, Alexandre Pellan, Chang, Adrienne, Smalling, Sami, Djomnang, Liz-Audrey Kounatse, Lenz, Joan Sesing, Longman, Randy, Steadman, Amy, Gómez-Escobar, Luis G., Schenck, Edward J., Salvatore, Mirella, Satlin, Michael J., Suthanthiran, Manikkam, Lee, John R., Mason, Christopher E., Dadhania, Darshana, De Vlaminck, Iwijn
Published in Nature communications (21.07.2022)
Published in Nature communications (21.07.2022)
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Deep sequencing of DNA from urine of kidney allograft recipients to estimate donor/recipient-specific DNA fractions
Belkadi, Aziz, Thareja, Gaurav, Dadhania, Darshana, Lee, John R, Muthukumar, Thangamani, Snopkowski, Catherine, Li, Carol, Halama, Anna, Abdelkader, Sara, Abdulla, Silvana, Mahmoud, Yasmin, Malek, Joel, Suthanthiran, Manikkam, Suhre, Karsten
Published in PloS one (15.04.2021)
Published in PloS one (15.04.2021)
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Journal Article
Exome Sequencing and Prediction of Long-Term Kidney Allograft Function
Mesnard, Laurent, Muthukumar, Thangamani, Burbach, Maren, Li, Carol, Shang, Huimin, Dadhania, Darshana, Lee, John R, Sharma, Vijay K, Xiang, Jenny, Suberbielle, Caroline, Carmagnat, Maryvonnick, Ouali, Nacera, Rondeau, Eric, Friedewald, John J, Abecassis, Michael M, Suthanthiran, Manikkam, Campagne, Fabien
Published in PLoS computational biology (01.09.2016)
Published in PLoS computational biology (01.09.2016)
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Metagenomics combined with activity-based proteomics point to gut bacterial enzymes that reactivate mycophenolate
Simpson, Joshua B., Sekela, Josh J., Graboski, Amanda L., Borlandelli, Valentina B., Bivins, Marissa M., Barker, Natalie K., Sorgen, Alicia A., Mordant, Angie L., Johnson, Rebecca L., Bhatt, Aadra P., Fodor, Anthony A., Herring, Laura E., Overkleeft, Hermen, Lee, John R., Redinbo, Matthew. R.
Published in Gut microbes (31.12.2022)
Published in Gut microbes (31.12.2022)
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Urinary Cell mRNA Profiles and Differential Diagnosis of Acute Kidney Graft Dysfunction
MATIGNON, Marie, RUCHUANG DING, SHARMA, Vijay K, HUA YANG, NOUR, Bakr, VICKERS, Andrew J, SUTHANTHIRAN, Manikkam, MUTHUKUMAR, Thangamani, DADHANIA, Darshana M, MUELLER, Franco B, HARTONO, Choli, SNOPKOWSKI, Catherine, CAROL LI, LEE, John R, SJOBERG, Daniel, SESHAN, Surya V
Published in Journal of the American Society of Nephrology (01.07.2014)
Published in Journal of the American Society of Nephrology (01.07.2014)
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Journal Article
KIBRA upregulation increases susceptibility to podocyte injury and glomerular disease progression
Meliambro, Kristin, Yang, Yanfeng, de Cos, Marina, Rodriguez Ballestas, Estefania, Malkin, Caroline, Haydak, Jonathan, Lee, John R, Salem, Fadi, Mariani, Laura H, Gordon, Ronald E, Basgen, John M, Wen, Huei Hsun, Fu, Jia, Azeloglu, Evren U, He, John Cijiang, Wong, Jenny S, Campbell, Kirk N
Published in JCI insight (10.04.2023)
Published in JCI insight (10.04.2023)
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Journal Article
COVID‐19 outcomes in patients waitlisted for kidney transplantation and kidney transplant recipients
Craig‐Schapiro, Rebecca, Salinas, Thalia, Lubetzky, Michelle, Abel, Brittany T., Sultan, Samuel, Lee, John R., Kapur, Sandip, Aull, Meredith J., Dadhania, Darshana M.
Published in American Journal of Transplantation (01.04.2021)
Published in American Journal of Transplantation (01.04.2021)
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Independent risk factors for urinary tract infection and for subsequent bacteremia or acute cellular rejection: a single-center report of 1166 kidney allograft recipients
Lee, John R, Bang, Heejung, Dadhania, Darshana, Hartono, Choli, Aull, Meredith J, Satlin, Michael, August, Phyllis, Suthanthiran, Manikkam, Muthukumar, Thangamani
Published in Transplantation (27.10.2013)
Published in Transplantation (27.10.2013)
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Kidney allograft recipients, immunosuppression, and coronavirus disease-2019: a report of consecutive cases from a New York City transplant center
Lubetzky, Michelle, Aull, Meredith J, Craig-Schapiro, Rebecca, Lee, John R, Marku-Podvorica, Jehona, Salinas, Thalia, Gingras, Laura, Lee, Jun B, Sultan, Samuel, Kodiyanplakkal, Rosy Priya, Hartono, Choli, Saal, Stuart, Muthukumar, Thangamani, Kapur, Sandip, Suthanthiran, Manikkam, Dadhania, Darshana M
Published in Nephrology Dialysis Transplantation (01.07.2020)
Published in Nephrology Dialysis Transplantation (01.07.2020)
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Web Resource
Clostridium Difficile Infections and Associated Transplant Complications in Kidney Transplant Recipients
Mehta, Amit, Wagner, Michael, Lee, John R
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2017)
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2017)
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Journal Article
Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups
Huang, Yufang, Liu, Yifan, Steel, Peter A D, Axsom, Kelly M, Lee, John R, Tummalapalli, Sri Lekha, Wang, Fei, Pathak, Jyotishman, Subramanian, Lakshminarayanan, Zhang, Yiye
Published in Journal of the American Medical Informatics Association : JAMIA (25.11.2021)
Published in Journal of the American Medical Informatics Association : JAMIA (25.11.2021)
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Journal Article
Characteristics of Acute Kidney Injury in Hospitalized COVID-19 Patients in an Urban Academic Medical Center
Lee, John R, Silberzweig, Jeffrey, Akchurin, Oleh, Choi, Mary E, Srivatana, Vesh, Lin, Jonathan, Liu, Frank, Malha, Line, Lubetzky, Michelle, Dadhania, Darshana M, Shankaranarayanan, Divya, Shimonov, Daniil, Neupane, Sanjay, Salinas, Thalia, Bhasin, Aarti, Varma, Elly, Leuprecht, Lorenz, Gerardine, Supriya, Lamba, Perola, Goyal, Parag, Caliendo, Eric, Tiase, Victoria, Sharma, Rahul, Park, Joel C, Steel, Peter A D, Suthanthiran, Manikkam, Zhang, Yiye
Published in Clinical journal of the American Society of Nephrology (08.02.2021)
Published in Clinical journal of the American Society of Nephrology (08.02.2021)
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