Elucidation of Tumor-Stromal Heterogeneity and the Ligand-Receptor Interactome by Single-Cell Transcriptomics in Real-world Pancreatic Cancer Biopsies
Lee, Jaewon J, Bernard, Vincent, Semaan, Alexander, Monberg, Maria E, Huang, Jonathan, Stephens, Bret M, Lin, Daniel, Rajapakshe, Kimal I, Weston, Brian R, Bhutani, Manoop S, Haymaker, Cara L, Bernatchez, Chantale, Taniguchi, Cullen M, Maitra, Anirban, Guerrero, Paola A
Published in Clinical cancer research (01.11.2021)
Published in Clinical cancer research (01.11.2021)
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Journal Article
Relative Abundance of SARS-CoV-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract
Lee, Jaewon J, Kopetz, Scott, Vilar, Eduardo, Shen, John Paul, Chen, Ken, Maitra, Anirban
Published in Genes (11.06.2020)
Published in Genes (11.06.2020)
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Journal Article
Defining the Comprehensive Genomic Landscapes of Pancreatic Ductal Adenocarcinoma Using Real-World Endoscopic Aspiration Samples
Semaan, Alexander, Bernard, Vincent, Lee, Jaewon J, Wong, Justin W, Huang, Jonathan, Swartzlander, Daniel B, Stephens, Bret M, Monberg, Maria E, Weston, Brian R, Bhutani, Manoop S, Chang, Kyle, Scheet, Paul A, Maitra, Anirban, Jakubek, Yasminka A, Guerrero, Paola A
Published in Clinical cancer research (15.02.2021)
Published in Clinical cancer research (15.02.2021)
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Journal Article
Occult polyclonality of preclinical pancreatic cancer models drives in vitro evolution
Monberg, Maria E, Geiger, Heather, Lee, Jaewon J, Sharma, Roshan, Semaan, Alexander, Bernard, Vincent, Wong, Justin, Wang, Fang, Liang, Shaoheng, Swartzlander, Daniel B, Stephens, Bret M, Katz, Matthew H G, Chen, Ken, Robine, Nicolas, Guerrero, Paola A, Maitra, Anirban
Published in Nature communications (25.06.2022)
Published in Nature communications (25.06.2022)
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Journal Article
Stromal HIF2 Regulates Immune Suppression in the Pancreatic Cancer Microenvironment
Garcia Garcia, Carolina J., Huang, Yanqing, Fuentes, Natividad R., Turner, Madeleine C., Monberg, Maria E., Lin, Daniel, Nguyen, Nicholas D., Fujimoto, Tara N., Zhao, Jun, Lee, Jaewon J., Bernard, Vincent, Yu, Meifang, Delahoussaye, Abagail M., Jimenez Sacarello, Iancarlos, Caggiano, Emily G., Phan, Jae L., Deorukhkar, Amit, Molkentine, Jessica M., Saur, Dieter, Maitra, Anirban, Taniguchi, Cullen M.
Published in Gastroenterology (New York, N.Y. 1943) (01.06.2022)
Published in Gastroenterology (New York, N.Y. 1943) (01.06.2022)
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Journal Article
Characterisation of circulating tumour cell phenotypes identifies a partial-EMT sub-population for clinical stratification of pancreatic cancer
Semaan, Alexander, Bernard, Vincent, Kim, Dong U, Lee, Jaewon J, Huang, Jonathan, Kamyabi, Nabiollah, Stephens, Bret M, Qiao, Wei, Varadhachary, Gauri R, Katz, Matthew H, Shen, Yu, San Lucas, Francis Anthony, Gascoyne, Peter, Alvarez, Hector A, Maitra, Anirban, Guerrero, Paola A
Published in British journal of cancer (08.06.2021)
Published in British journal of cancer (08.06.2021)
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Journal Article
Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-Specific Transcriptome and Molecular Subtype
Bahrambeigi, Vahid, Lee, Jaewon J, Branchi, Vittorio, Rajapakshe, Kimal I, Xu, Zhichao, Kui, Naishu, Henry, Jason T, Kun, Wang, Stephens, Bret M, Dhebat, Sarah, Hurd, Mark W, Sun, Ryan, Yang, Peng, Ruppin, Eytan, Wang, Wenyi, Kopetz, Scott, Maitra, Anirban, Guerrero, Paola A
Published in Cancer research (Chicago, Ill.) (15.05.2024)
Published in Cancer research (Chicago, Ill.) (15.05.2024)
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Journal Article
Inhibition of epithelial cell migration and Src/FAK signaling by SIRT3
Lee, Jaewon J., van de Ven, Robert A. H., Zaganjor, Elma, Ng, Mei Rosa, Barakat, Amey, Demmers, Joris J. P. G., Finley, Lydia W. S., Herrera, Karina N. Gonzalez, Hung, Yin Pun, Harris, Isaac S., Jeong, Seung Min, Danuser, Gaudenz, McAllister, Sandra S., Haigis, Marcia C.
Published in Proceedings of the National Academy of Sciences - PNAS (03.07.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (03.07.2018)
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Journal Article
Significance of Distinct Liquid Biopsy Compartments in Evaluating Somatic Mutations for Targeted Therapy Selection in Cancer of Unknown Primary
Kolbinger, Fiona R., Bernard, Vincent, Lee, Jaewon J., Stephens, Bret M., Branchi, Vittorio, Raghav, Kanwal P. S., Maitra, Anirban, Guerrero, Paola A., Semaan, Alexander
Published in Journal of gastrointestinal cancer (01.12.2023)
Published in Journal of gastrointestinal cancer (01.12.2023)
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Journal Article
A microfluidic device for label-free isolation of tumor cell clusters from unprocessed blood samples
Kamyabi, Nabiollah, Huang, Jonathan, Lee, Jaewon J., Bernard, Vincent, Semaan, Alexander, Stephens, Bret, Hurd, Mark W., Vanapalli, Siva A., Maitra, Anirban, Guerrero, Paola A.
Published in Biomicrofluidics (01.07.2019)
Published in Biomicrofluidics (01.07.2019)
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Journal Article
Integrated Molecular Characterization of Intraductal Papillary Mucinous Neoplasms: An NCI Cancer Moonshot Precancer Atlas Pilot Project
Semaan, Alexander, Bernard, Vincent, Wong, Justin, Makino, Yuki, Swartzlander, Daniel B, Rajapakshe, Kimal I, Lee, Jaewon J, Officer, Adam, Schmidt, Christian Max, Wu, Howard H, Scaife, Courtney L, Affolter, Kajsa E, Nachmanson, Daniela, Firpo, Matthew A, Yip-Schneider, Michele, Lowy, Andrew M, Harismendy, Olivier, Sen, Subrata, Maitra, Anirban, Jakubek, Yasminka A, Guerrero, Paola A
Published in Cancer research communications (10.10.2023)
Published in Cancer research communications (10.10.2023)
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Journal Article
Abstract PO-010: Elucidating intratumoral heterogeneity and predicting effective combination regimens in PDAC PDOs using scRNA-seq and snATAC-seq
Guerrero, Paola A., Maitra, Anirban, Monberg, Maria E., Lee, Jaewon J, Bernard-Pagan, Vincent, Muthuswamy, Senthil
Published in Cancer research (Chicago, Ill.) (15.11.2020)
Published in Cancer research (Chicago, Ill.) (15.11.2020)
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Journal Article
Abstract A33: Single-cell profiling reveals subclonal vulnerabilities to therapy in patient-derived 2D and organoid models
Monberg, Maria E., Pagan, Vincent B., Semaan, Alexander, Lee, Jaewon J., Guerrero, Paola A., Muthuswamy, Senthil K., Maitra, Anirban
Published in Cancer research (Chicago, Ill.) (15.12.2019)
Published in Cancer research (Chicago, Ill.) (15.12.2019)
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Journal Article
Abstract 2136: Diversity across the pancreatic ductal adenocarcinoma disease spectrum revealed by network-anchored functional genomics
Srinivasan, Sanjana, Rose, Johnathon, Yao, Wantong, Seth, Sahil, Peoples, Michael, Machado, Annette, Li, Chieh-Yuan, Ho, I Lin, Lee, Jaewon J., Guerrera, Paola A., Kim, Eiru, Syed, Mustafa, Daniele, Joseph, Deem, Angela K., Kim, Michael, Bristow, Christopher A., Koay, Eugene, Genovese, Giannicola, Viale, Andrea, Heffernan, Timothy P., Maitra, Anirban, Hart, Traver, Carugo, Alessandro, Draetta, Giulio
Published in Cancer research (Chicago, Ill.) (01.07.2021)
Published in Cancer research (Chicago, Ill.) (01.07.2021)
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Journal Article
Abstract A048: Paricalcitol improves survival in tumor-permissive cancer-associated fibroblast subtype of pancreatic cancers
Lee, Jaewon J, Chan, Priscilla S, Luan, Changfei, Kharitonova, Elena V, Rashid, Naim U, Peng, Xianlu L, Borazanci, Erkut H, Yeh, Jen Jen
Published in Cancer research (Chicago, Ill.) (15.09.2024)
Published in Cancer research (Chicago, Ill.) (15.09.2024)
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Journal Article
Abstract PR013: Transcriptomic profiling of liquid biopsy in colorectal cancer
Bahrambeigi, Vahid, Lee, Jaewon J., Rajapakshe, Kimal I., Stephens, Bret M., Henry, Jason T., Dhebat, Sarah, Hurd, Mark W., Sun, Ryan, Kopetz, Scott, Maitra, Anirban, Guerrero, Paola A.
Published in Cancer research (Chicago, Ill.) (01.12.2022)
Published in Cancer research (Chicago, Ill.) (01.12.2022)
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Journal Article
Elucidation of tumor-stromal heterogeneity and the ligand-receptor interactome by single cell transcriptomics in real-world pancreatic cancer biopsies
Lee, Jaewon J, Vincent, Bernard, Semaan, Alexander, Monberg, Maria E, Huang, Jonathan, Stephens, Bret M, Lin, Daniel, Weston, Brian R, Bhutani, Manoop S, Haymaker, Cara L, Bernatchez, Chantale, Taniguchi, Cullen M, Maitra, Anirban, Guerrero, Paola A
Published in bioRxiv (29.07.2020)
Published in bioRxiv (29.07.2020)
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Paper
Diversity Across the Pancreatic Ductal Adenocarcinoma Disease Spectrum Revealed by Network-Anchored Functional Genomics
Rose, Johnathon L, Srinivasan, Sanjana, Yao, Wantong, Sahil Seth, Peoples, Michael, Machado, Annette, Chieh-Yuan, Li, I-Lin, Ho, Lee, Jaewon J, Guerrero, Paola A, Kim, Eiru, Mustafa, Syed, Daniele, Joseph R, Deem, Angela, Kim, Michael, Bristow, Christopher A, Koay, Eugene J, Genovese, Giannicola, Viale, Andrea, Heffernan, Timothy P, Maitra, Anirban, Hart, Traver, Carugo, Alessandro, Draetta, Giulio F
Published in bioRxiv (19.09.2020)
Published in bioRxiv (19.09.2020)
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Paper