Predicting severity in COVID-19 disease using sepsis blood gene expression signatures
Baghela, Arjun, An, Andy, Zhang, Peter, Acton, Erica, Gauthier, Jeff, Brunet-Ratnasingham, Elsa, Blimkie, Travis, Freue, Gabriela Cohen, Kaufmann, Daniel, Lee, Amy H. Y., Levesque, Roger C., Hancock, Robert E. W.
Published in Scientific reports (23.01.2023)
Published in Scientific reports (23.01.2023)
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DNA Methylation signatures underpinning blood neutrophil to lymphocyte ratio during first week of human life
Martino, David, Kresoje, Nina, Amenyogbe, Nelly, Ben-Othman, Rym, Cai, Bing, Lo, Mandy, Idoko, Olubukola, Odumade, Oludare A., Falsafi, Reza, Blimkie, Travis M., An, Andy, Shannon, Casey P., Montante, Sebastiano, Dhillon, Bhavjinder K., Diray-Arce, Joann, Ozonoff, Al, Smolen, Kinga K., Brinkman, Ryan R., McEnaney, Kerry, Angelidou, Asimenia, Richmond, Peter, Tebbutt, Scott J., Kampmann, Beate, Levy, Ofer, Hancock, Robert E. W., Lee, Amy H. Y., Kollmann, Tobias R.
Published in Nature communications (17.09.2024)
Published in Nature communications (17.09.2024)
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Peptide 1018 inhibits swarming and influences Anr-regulated gene expression downstream of the stringent stress response in Pseudomonas aeruginosa
Wilkinson, Lauren V, Alford, Morgan A, Coleman, Shannon R, Wu, Bing C, Lee, Amy H Y, Blimkie, Travis M, Bains, Manjeet, Falsafi, Reza, Pletzer, Daniel, Hancock, Robert E W
Published in PloS one (30.04.2021)
Published in PloS one (30.04.2021)
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Gene Expression Profiling in Pediatric Appendicitis
Dhillon, Bhavjinder K, Kortbeek, Simone, Baghela, Arjun, Brindle, Mary, Martin, Dori-Ann, Jenne, Craig N, Vogel, Hans J, Lee, Amy H Y, Thompson, Graham C, Hancock, Robert E W
Published in JAMA pediatrics (01.04.2024)
Published in JAMA pediatrics (01.04.2024)
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Pseudomonas aeruginosa in chronic lung disease: untangling the dysregulated host immune response
Nickerson, Rhea, Thornton, Christina S, Johnston, Brent, Lee, Amy H Y, Cheng, Zhenyu
Published in Frontiers in immunology (28.06.2024)
Published in Frontiers in immunology (28.06.2024)
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Systems Biology Approaches to Understanding the Human Immune System
Dhillon, Bhavjinder K, Smith, Maren, Baghela, Arjun, Lee, Amy H Y, Hancock, Robert E W
Published in Frontiers in immunology (30.07.2020)
Published in Frontiers in immunology (30.07.2020)
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MetaBridge: enabling network-based integrative analysis via direct protein interactors of metabolites
Hinshaw, Samuel J, H Y Lee, Amy, Gill, Erin E, E W Hancock, Robert
Published in Bioinformatics (15.09.2018)
Published in Bioinformatics (15.09.2018)
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Post-COVID symptoms are associated with endotypes reflecting poor inflammatory and hemostatic modulation
An, Andy Yi, Baghela, Arjun, Zhang, Peter G. Y., Blimkie, Travis M., Gauthier, Jeff, Kaufmann, Daniel Elias, Acton, Erica, Lee, Amy H. Y., Levesque, Roger C., Hancock, Robert E. W.
Published in Frontiers in immunology (23.08.2023)
Published in Frontiers in immunology (23.08.2023)
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Rhinovirus Infection Drives Complex Host Airway Molecular Responses in Children With Cystic Fibrosis
Ling, Kak-Ming, Garratt, Luke W, Gill, Erin E, Lee, Amy H Y, Agudelo-Romero, Patricia, Sutanto, Erika N, Iosifidis, Thomas, Rosenow, Tim, Turvey, Stuart E, Lassmann, Timo, Hancock, Robert E W, Kicic, Anthony, Stick, Stephen M
Published in Frontiers in immunology (16.07.2020)
Published in Frontiers in immunology (16.07.2020)
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Different Disease Endotypes in Phenotypically Similar Vasculitides Affecting Small-to-Medium Sized Blood Vessels
Gill, Erin E, Smith, Maren L, Gibson, Kristen M, Morishita, Kimberly A, Lee, Amy H Y, Falsafi, Reza, Graham, Jinko, Foell, Dirk, Benseler, Susanne M, Ross, Colin J, Luqmani, Raashid A, Cabral, David A, Hancock, Robert E W, Brown, Kelly L
Published in Frontiers in immunology (22.02.2021)
Published in Frontiers in immunology (22.02.2021)
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The Stringent Stress Response Controls Proteases and Global Regulators under Optimal Growth Conditions in Pseudomonas aeruginosa
Pletzer, Daniel, Blimkie, Travis M., Wolfmeier, Heidi, Li, Yicong, Baghela, Arjun, Lee, Amy H. Y., Falsafi, Reza, Hancock, Robert E. W.
Published in mSystems (04.08.2020)
Published in mSystems (04.08.2020)
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Genomic insights into the diversity, virulence and resistance of Klebsiella pneumoniae extensively drug resistant clinical isolates
Lee, Amy H Y, Porto, William F, de Faria, Jr, Célio, Dias, Simoni C, Alencar, Sérgio A, Pickard, Derek J, Hancock, Robert E W, Franco, Octavio L
Published in Microbial genomics (01.08.2021)
Published in Microbial genomics (01.08.2021)
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A Commentary on Multi-omics Data Integration in Systems Vaccinology
Shannon, Casey P, Lee, Amy HY, Tebbutt, Scott J, Singh, Amrit
Published in Journal of molecular biology (15.04.2024)
Published in Journal of molecular biology (15.04.2024)
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Characterization of Host Responses during Pseudomonas aeruginosa Acute Infection in the Lungs and Blood and after Treatment with the Synthetic Immunomodulatory Peptide IDR-1002
Wuerth, Kelli, Lee, Amy H Y, Falsafi, Reza, Gill, Erin E, Hancock, Robert E W
Published in Infection and immunity (01.01.2019)
Published in Infection and immunity (01.01.2019)
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A Genome-Wide Knockout Screen in Human Macrophages Identified Host Factors Modulating Salmonella Infection
Yeung, Amy T Y, Choi, Yoon Ha, Lee, Amy H Y, Hale, Christine, Ponstingl, Hannes, Pickard, Derek, Goulding, David, Thomas, Mark, Gill, Erin, Kim, Jong Kyoung, Bradley, Allan, Hancock, Robert E W, Dougan, Gordon
Published in mBio (08.10.2019)
Published in mBio (08.10.2019)
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Gut microbes shape microglia and cognitive function during malnutrition
Bauer, Kylynda C., York, Elisa M., Cirstea, Mihai S., Radisavljevic, Nina, Petersen, Charisse, Huus, Kelsey E., Brown, Eric M., Bozorgmehr, Tahereh, Berdún, Rebeca, Bernier, Louis‐Philippe, Lee, Amy H. Y., Woodward, Sarah E., Krekhno, Zakhar, Han, Jun, Hancock, Robert E. W., Ayala, Victoria, MacVicar, Brian A., Finlay, Barton Brett
Published in Glia (01.05.2022)
Published in Glia (01.05.2022)
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Characterization of immune responses and the lung transcriptome in a murine model of IL-33 challenge
Piyadasa, Hadeesha, Lloyd, Dylan, Lee, Amy H.Y., Altieri, Anthony, Hemshekhar, Mahadevappa, Osawa, Natasha, Basu, Sujata, Blimkie, Travis, Falsafi, Reza, Halayko, Andrew J., Hancock, Robert E.W., Mookherjee, Neeloffer
Published in Biochimica et biophysica acta. Molecular basis of disease (01.12.2020)
Published in Biochimica et biophysica acta. Molecular basis of disease (01.12.2020)
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Pathogen-associated gene discovery workflows for novel antivirulence therapeutic development
Lau, Wing Yin Venus, Taylor, Patrick K., Brinkman, Fiona S.L., Lee, Amy H.Y.
Published in EBioMedicine (01.02.2023)
Published in EBioMedicine (01.02.2023)
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Ivacaftor or lumacaftor/ivacaftor treatment does not alter the core CF airway epithelial gene response to rhinovirus
De Jong, Emma, Garratt, Luke W., Looi, Kevin, Lee, Amy H.Y., Ling, Kak-Ming, Smith, Maren L., Falsafi, Reza, Sutanto, Erika N., Hillas, Jessica, Iosifidis, Thomas, Martinovich, Kelly M., Shaw, Nicole C., Montgomery, Samuel T., Kicic-Starcevich, Elizabeth, Lannigan, Francis J., Vijayasekaran, Shyan, Hancock, Robert E.W., Stick, Stephen M., Kicic, Anthony, AREST, CF
Published in Journal of cystic fibrosis (01.01.2021)
Published in Journal of cystic fibrosis (01.01.2021)
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