Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Published in Nature communications (19.10.2020)
Published in Nature communications (19.10.2020)
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Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia
Hugerth, Luisa W, Muller, Emilie E L, Hu, Yue O O, Lebrun, Laura A M, Roume, Hugo, Lundin, Daniel, Wilmes, Paul, Andersson, Anders F
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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In situ phenotypic heterogeneity among single cells of the filamentous bacterium Candidatus Microthrix parvicella
Sheik, Abdul R, Muller, Emilie EL, Audinot, Jean-Nicolas, Lebrun, Laura A, Grysan, Patrick, Guignard, Cedric, Wilmes, Paul
Published in The ISME Journal (01.05.2016)
Published in The ISME Journal (01.05.2016)
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Journal Article
Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage
Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Published in Nature communications (26.11.2014)
Published in Nature communications (26.11.2014)
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Journal Article
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics
Martínez Arbas, Susana, Narayanasamy, Shaman, Herold, Malte, Lebrun, Laura A., Hoopmann, Michael R., Li, Sujun, Lam, Tony J., Kunath, Benoît J., Hicks, Nathan D., Liu, Cindy M., Price, Lance B., Laczny, Cedric C., Gillece, John D., Schupp, James M., Keim, Paul S., Moritz, Robert L., Faust, Karoline, Tang, Haixu, Ye, Yuzhen, Skupin, Alexander, May, Patrick, Muller, Emilie E. L., Wilmes, Paul
Published in Nature microbiology (01.01.2021)
Published in Nature microbiology (01.01.2021)
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Journal Article
First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ
Muller, Emilie E L, Narayanasamy, Shaman, Zeimes, Myriam, Laczny, Cédric C, Lebrun, Laura A, Herold, Malte, Hicks, Nathan D, Gillece, John D, Schupp, James M, Keim, Paul, Wilmes, Paul
Published in Environmental microbiome (18.10.2017)
Published in Environmental microbiome (18.10.2017)
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Journal Article
Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes
Heintz-Buschart, Anna, May, Patrick, Laczny, Cédric C., Lebrun, Laura A., Bellora, Camille, Krishna, Abhimanyu, Wampach, Linda, Schneider, Jochen G., Hogan, Angela, de Beaufort, Carine, Wilmes, Paul
Published in Nature microbiology (10.10.2016)
Published in Nature microbiology (10.10.2016)
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Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics
Chaib De Mares, Maryam, Jiménez, Diego Javier, Palladino, Giorgia, Gutleben, Johanna, Lebrun, Laura A., Muller, Emilie E. L., Wilmes, Paul, Sipkema, Detmer, van Elsas, Jan Dirk
Published in Scientific reports (07.08.2018)
Published in Scientific reports (07.08.2018)
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Journal Article
Sequential Isolation of DNA, RNA, Protein, and Metabolite Fractions from Murine Organs and Intestinal Contents for Integrated Omics of Host-Microbiota Interactions
Shah, Pranjul, Muller, Emilie E L, Lebrun, Laura A, Wampach, Linda, Wilmes, Paul
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2018)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2018)
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Journal Article
Forecasting the dynamics of a complex microbial community using integrated meta-omics
Delogu, Francesco, Kunath, Benoit J., Queirós, Pedro M., Halder, Rashi, Lebrun, Laura A., Pope, Phillip B., May, Patrick, Widder, Stefanie, Muller, Emilie E. L., Wilmes, Paul
Published in Nature ecology & evolution (01.01.2024)
Published in Nature ecology & evolution (01.01.2024)
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Journal Article
Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks
Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Published in NPJ biofilms and microbiomes (17.06.2015)
Published in NPJ biofilms and microbiomes (17.06.2015)
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Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract
Laczny, Cedric C, Muller, Emilie E L, Heintz-Buschart, Anna, Herold, Malte, Lebrun, Laura A, Hogan, Angela, May, Patrick, de Beaufort, Carine, Wilmes, Paul
Published in Frontiers in microbiology (21.06.2016)
Published in Frontiers in microbiology (21.06.2016)
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Journal Article
Erratum: Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes
Heintz-Buschart, Anna, May, Patrick, Laczny, Cédric C., Lebrun, Laura A., Bellora, Camille, Krishna, Abhimanyu, Wampach, Linda, Schneider, Jochen G., Hogan, Angela, Beaufort, Carine de, Wilmes, Paul
Published in Nature microbiology (24.10.2016)
Published in Nature microbiology (24.10.2016)
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Journal Article
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Published in Nature communications (19.10.2020)
Published in Nature communications (19.10.2020)
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Journal Article
Author Correction: Global diversity and biogeography of bacterial communities in wastewater treatment plants
Wu, Linwei, Ning, Daliang, Zhang, Bing, Li, Yong, Zhang, Ping, Shan, Xiaoyu, Zhang, Qiuting, Brown, Mathew Robert, Li, Zhenxin, Van Nostrand, Joy D., Ling, Fangqiong, Xiao, Naijia, Zhang, Ya, Vierheilig, Julia, Wells, George F., Yang, Yunfeng, Deng, Ye, Tu, Qichao, Wang, Aijie, Zhang, Tong, He, Zhili, Keller, Jurg, Nielsen, Per H., Alvarez, Pedro J. J., Criddle, Craig S., Wagner, Michael, Tiedje, James M., He, Qiang, Curtis, Thomas P., Stahl, David A., Alvarez-Cohen, Lisa, Rittmann, Bruce E., Wen, Xianghua, Zhou, Jizhong
Published in Nature microbiology (01.12.2019)
Published in Nature microbiology (01.12.2019)
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