Signatures of optimal codon usage in metabolic genes inform budding yeast ecology
LaBella, Abigail Leavitt, Opulente, Dana A, Steenwyk, Jacob L, Hittinger, Chris Todd, Rokas, Antonis
Published in PLoS biology (19.04.2021)
Published in PLoS biology (19.04.2021)
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Journal Article
Autologous cell transplantation for treatment of colorectal aganglionosis in mice
Pan, Weikang, Rahman, Ahmed A., Ohkura, Takahiro, Stavely, Rhian, Ohishi, Kensuke, Han, Christopher Y., Leavitt, Abigail, Kashiwagi, Aki, Burns, Alan J., Goldstein, Allan M., Hotta, Ryo
Published in Nature communications (20.03.2024)
Published in Nature communications (20.03.2024)
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Journal Article
Mature enteric neurons have the capacity to reinnervate the intestine with glial cells as their guide
Stavely, Rhian, Rahman, Ahmed A., Mueller, Jessica L., Leavitt, Abigail R., Han, Christopher Y., Pan, Weikang, Kaiser, Kyla N., Ott, Leah C., Ohkura, Takahiro, Guyer, Richard A., Burns, Alan J., Koppes, Abigail N., Hotta, Ryo, Goldstein, Allan M.
Published in Neuron (Cambridge, Mass.) (25.09.2024)
Published in Neuron (Cambridge, Mass.) (25.09.2024)
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Journal Article
Resolving Resident Colonic Muscularis Macrophage Diversity and Plasticity During Colitis
Ohishi, Kensuke, Dora, David, Han, Christopher Y, Guyer, Richard A, Ohkura, Takahiro, Kazimierczyk, Simon, Picard, Nicole, Leavitt, Abigail R, Ott, Leah C, Rahman, Ahmed A, Mueller, Jessica L, Shpigel, Nahum Y, Jain, Nitya, Nagy, Nandor, Hotta, Ryo, Goldstein, Allan M, Stavely, Rhian
Published in Inflammatory bowel diseases (05.08.2024)
Published in Inflammatory bowel diseases (05.08.2024)
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Journal Article
Exploring Saccharomycotina Yeast Ecology Through an Ecological Ontology Framework
Harrison, Marie‐Claire, Opulente, Dana A., Wolters, John F., Shen, Xing‐Xing, Zhou, Xiaofan, Groenewald, Marizeth, Hittinger, Chris Todd, Rokas, Antonis, LaBella, Abigail Leavitt
Published in Yeast (Chichester, England) (01.10.2024)
Published in Yeast (Chichester, England) (01.10.2024)
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Journal Article
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts
Opulente, Dana A, LaBella, Abigail Leavitt, Harrison, Marie-Claire, Wolters, John F, Liu, Chao, Li, Yonglin, Kominek, Jacek, Steenwyk, Jacob L, Stoneman, Hayley R, VanDenAvond, Jenna, Miller, Caroline R, Langdon, Quinn K, Silva, Margarida, Gonçalves, Carla, Ubbelohde, Emily J, Li, Yuanning, Buh, Kelly V, Jarzyna, Martin, Haase, Max A B, Rosa, Carlos A, ČCadež, Neža, Libkind, Diego, DeVirgilio, Jeremy H, Hulfachor, Amanda Beth, Kurtzman, Cletus P, Sampaio, José Paulo, Gonçalves, Paula, Zhou, Xiaofan, Shen, Xing-Xing, Groenewald, Marizeth, Rokas, Antonis, Hittinger, Chris Todd
Published in Science (American Association for the Advancement of Science) (26.04.2024)
Published in Science (American Association for the Advancement of Science) (26.04.2024)
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Journal Article
Highly neurogenic glia from human and mouse myenteric ganglia generate functional neurons following culture and transplantation into the gut
Mueller, Jessica L., Leavitt, Abigail R., Rahman, Ahmed A., Han, Christopher Y., Ott, Leah C., Mahdavian, Narges S., Carbone, Simona E., King, Sebastian K., Burns, Alan J., Poole, Daniel P., Hotta, Ryo, Goldstein, Allan M., Stavely, Rhian
Published in Cell reports (Cambridge) (28.10.2024)
Published in Cell reports (Cambridge) (28.10.2024)
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Journal Article
Differentiated neuroblastoma cells remain epigenetically poised for de-differentiation to an immature state
Guyer, Richard A, Picard, Nicole, Mueller, Jessica L, Ohishi, Kensuke, Leavitt, Abigail, Murphy, Andrew J, Cornejo, Kristine M, Hotta, Ryo, Goldstein, Allan M
Published in Disease models & mechanisms (01.12.2023)
Published in Disease models & mechanisms (01.12.2023)
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Journal Article
Amplicon sequencing of 42 nuclear loci supports directional gene flow between South Pacific populations of a hydrothermal vent limpet
Plouviez, Sophie, LaBella, Abigail Leavitt, Weisrock, David W., von Meijenfeldt, F. A. Bastiaan, Ball, Bernard, Neigel, Joseph E., Van Dover, Cindy L.
Published in Ecology and evolution (01.06.2019)
Published in Ecology and evolution (01.06.2019)
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Journal Article
Codon Optimization Improves the Prediction of Xylose Metabolism from Gene Content in Budding Yeasts
Nalabothu, Rishitha L, Fisher, Kaitlin J, LaBella, Abigail Leavitt, Meyer, Taylor A, Opulente, Dana A, Wolters, John F, Rokas, Antonis, Hittinger, Chris Todd
Published in Molecular biology and evolution (01.06.2023)
Published in Molecular biology and evolution (01.06.2023)
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Journal Article
Microbiome-associated human genetic variants impact phenome-wide disease risk
Markowitz, Robert H George, LaBella, Abigail Leavitt, Shi, Mingjian, Rokas, Antonis, Capra, John A, Ferguson, Jane F, Mosley, Jonathan D, Bordenstein, Seth R
Published in Proceedings of the National Academy of Sciences - PNAS (28.06.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (28.06.2022)
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Journal Article
Functional and evolutionary integration of a fungal gene with a bacterial operon
Sun, Liang, David, Kyle T, Wolters, John F, Karlen, Steven D, Gonçalves, Carla, Opulente, Dana A, LaBella, Abigail Leavitt, Groenewald, Marizeth, Zhou, Xiaofan, Shen, Xing-Xing, Rokas, Antonis, Hittinger, Chris Todd
Published in Molecular biology and evolution (02.04.2024)
Published in Molecular biology and evolution (02.04.2024)
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Journal Article
Gene flow between Atlantic and Pacific Ocean basins in three lineages of deep-sea clams (Bivalvia: Vesicomyidae: Pliocardiinae) and subsequent limited gene flow within the Atlantic
LaBella, Abigail Leavitt, Van Dover, Cindy L., Jollivet, Didier, Cunningham, Clifford W.
Published in Deep-sea research. Part II, Topical studies in oceanography (01.03.2017)
Published in Deep-sea research. Part II, Topical studies in oceanography (01.03.2017)
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Journal Article
Functional and evolutionary integration of a fungal gene with a bacterial operon
Sun, Liang, David, Kyle T, Wolters, John F, Karlen, Steven D, Gonçalves, Carla, Opulente, Dana A, Leavitt LaBella, Abigail, Groenewald, Marizeth, Zhou, Xiaofan, Shen, Xing-Xing, Rokas, Antonis, Todd Hittinger, Chris
Published in bioRxiv (21.11.2023)
Published in bioRxiv (21.11.2023)
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Journal Article
Paper
Genomic factors shaping codon usage across the Saccharomycotina subphylum
Zavala, Bryan, Dineen, Lauren, Fisher, Kaitlin J, Opulente, Dana A, Harrison, Marie-Claire, Wolters, John F, Shen, Xing-Xing, Zhou, Xiaofan, Groenewald, Marizeth, Hittinger, Chris Todd, Rokas, Antonis, LaBella, Abigail Leavitt
Published in G3 : genes - genomes - genetics (30.08.2024)
Published in G3 : genes - genomes - genetics (30.08.2024)
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Journal Article
Genomic and ecological factors shaping specialism and generalism across an entire subphylum
Opulente, Dana A, Leavitt LaBella, Abigail, Harrison, Marie-Claire, Wolters, John F, Liu, Chao, Li, Yonglin, Kominek, Jacek, Steenwyk, Jacob L, Stoneman, Hayley R, VanDenAvond, Jenna, Miller, Caroline R, Langdon, Quinn K, Silva, Margarida, Gonçalves, Carla, Ubbelohde, Emily J, Li, Yuanning, Buh, Kelly V, Jarzyna, Martin, Haase, Max A B, Rosa, Carlos A, Čadež, Neža, Libkind, Diego, DeVirgilio, Jeremy H, Beth Hulfachor, Amanda, Kurtzman, Cletus P, Sampaio, José Paulo, Gonçalves, Paula, Zhou, Xiaofan, Shen, Xing-Xing, Groenewald, Marizeth, Rokas, Antonis, Hittinger, Chris Todd
Published in bioRxiv (08.09.2023)
Published in bioRxiv (08.09.2023)
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Journal Article
Enteric neural stem cell transplant restores gut motility in mice with Hirschsprung disease
Rahman, Ahmed A, Ohkura, Takahiro, Bhave, Sukhada, Pan, Weikang, Ohishi, Kensuke, Ott, Leah, Han, Christopher, Leavitt, Abigail, Stavely, Rhian, Burns, Alan J, Goldstein, Allan M, Hotta, Ryo
Published in JCI insight (23.07.2024)
Published in JCI insight (23.07.2024)
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Journal Article
Glass Vessels
Abigail Leavitt, Scott Stripling
Published in The Excavations at Khirbet el-Maqatir: 1995–2001 and 2009–2016 (30.03.2023)
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Published in The Excavations at Khirbet el-Maqatir: 1995–2001 and 2009–2016 (30.03.2023)
Book Chapter
General Objects
Abigail Leavitt, Scott Stripling, Frankie Snyder
Published in The Excavations at Khirbet el-Maqatir: 1995–2001 and 2009–2016 (30.03.2023)
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Published in The Excavations at Khirbet el-Maqatir: 1995–2001 and 2009–2016 (30.03.2023)
Book Chapter
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade
David, Kyle T, Schraiber, Joshua G, Crandall, Johnathan G, Labella, Abigal L, Opulente, Dana A, Harrison, Marie-Claire, Wolters, John F, Zhou, Xiaofan, Shen, Xing-Xing, Groenewald, Marizeth, Hittinger, Chris Todd, Pennell, Matt, Rokas, Antonis
Published in bioRxiv (23.07.2024)
Published in bioRxiv (23.07.2024)
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Journal Article