MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect
Esposito, Daniel, Weile, Jochen, Shendure, Jay, Starita, Lea M, Papenfuss, Anthony T, Roth, Frederick P, Fowler, Douglas M, Rubin, Alan F
Published in Genome Biology (04.11.2019)
Published in Genome Biology (04.11.2019)
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Journal Article
On the design of CRISPR-based single-cell molecular screens
Hill, Andrew J, McFaline-Figueroa, José L, Starita, Lea M, Gasperini, Molly J, Matreyek, Kenneth A, Packer, Jonathan, Jackson, Dana, Shendure, Jay, Trapnell, Cole
Published in Nature methods (01.04.2018)
Published in Nature methods (01.04.2018)
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Journal Article
A Multiplex Homology-Directed DNA Repair Assay Reveals the Impact of More Than 1,000 BRCA1 Missense Substitution Variants on Protein Function
Starita, Lea M., Islam, Muhtadi M., Banerjee, Tapahsama, Adamovich, Aleksandra I., Gullingsrud, Justin, Fields, Stanley, Shendure, Jay, Parvin, Jeffrey D.
Published in American journal of human genetics (04.10.2018)
Published in American journal of human genetics (04.10.2018)
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Journal Article
Massively Parallel Functional Analysis of BRCA1 RING Domain Variants
Starita, Lea M, Young, David L, Islam, Muhtadi, Kitzman, Jacob O, Gullingsrud, Justin, Hause, Ronald J, Fowler, Douglas M, Parvin, Jeffrey D, Shendure, Jay, Fields, Stanley
Published in Genetics (Austin) (01.06.2015)
Published in Genetics (Austin) (01.06.2015)
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Journal Article
Recommendations for application of the functional evidence PS3/BS3 criterion using the ACMG/AMP sequence variant interpretation framework
Brnich, Sarah E, Abou Tayoun, Ahmad N, Couch, Fergus J, Cutting, Garry R, Greenblatt, Marc S, Heinen, Christopher D, Kanavy, Dona M, Luo, Xi, McNulty, Shannon M, Starita, Lea M, Tavtigian, Sean V, Wright, Matt W, Harrison, Steven M, Biesecker, Leslie G, Berg, Jonathan S
Published in Genome medicine (31.12.2019)
Published in Genome medicine (31.12.2019)
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Journal Article
Assigning credit where it is due: an information content score to capture the clinical value of multiplexed assays of variant effect
Ranola, John Michael O, Horton, Carolyn, Pesaran, Tina, Fayer, Shawn, Starita, Lea M, Shirts, Brian H
Published in BMC bioinformatics (06.09.2024)
Published in BMC bioinformatics (06.09.2024)
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Journal Article
Multiplexed assay of variant effect reveals residues of functional importance in the BRCA1 coiled-coil and serine cluster domains
Nagy, Gregory, Diabate, Mariame, Banerjee, Tapahsama, Adamovich, Aleksandra I, Smith, Nahum, Jeon, Hyeongseon, Dhar, Shruti, Liu, Wenfang, Burgess, Katherine, Chung, Dongjun, Starita, Lea M, Parvin, Jeffrey D
Published in PloS one (02.11.2023)
Published in PloS one (02.11.2023)
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Journal Article
Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis
Starita, Lea M., Pruneda, Jonathan N., Lo, Russell S., Fowler, Douglas M., Kim, Helen J., Hiatt, Joseph B., Shendure, Jay, Brzovic, Peter S., Fields, Stanley, Klevit, Rachel E.
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
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Journal Article
Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements
Chardon, Florence M, McDiarmid, Troy A, Page, Nicholas F, Daza, Riza M, Martin, Beth K, Domcke, Silvia, Regalado, Samuel G, Lalanne, Jean-Benoît, Calderon, Diego, Li, Xiaoyi, Starita, Lea M, Sanders, Stephan J, Ahituv, Nadav, Shendure, Jay
Published in Nature communications (18.09.2024)
Published in Nature communications (18.09.2024)
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Journal Article
Multiplexed Functional Assessment of Genetic Variants in CARD11
Meitlis, Iana, Allenspach, Eric J., Bauman, Bradly M., Phan, Isabelle Q., Dabbah, Gina, Schmitt, Erica G., Camp, Nathan D., Torgerson, Troy R., Nickerson, Deborah A., Bamshad, Michael J., Hagin, David, Luthers, Christopher R., Stinson, Jeffrey R., Gray, Jessica, Lundgren, Ingrid, Church, Joseph A., Butte, Manish J., Jordan, Mike B., Aceves, Seema S., Schwartz, Daniella M., Milner, Joshua D., Schuval, Susan, Skoda-Smith, Suzanne, Cooper, Megan A., Starita, Lea M., Rawlings, David J., Snow, Andrew L., James, Richard G.
Published in American journal of human genetics (03.12.2020)
Published in American journal of human genetics (03.12.2020)
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Journal Article
Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years
Perofsky, Amanda C, Hansen, Chelsea L, Burstein, Roy, Boyle, Shanda, Prentice, Robin, Marshall, Cooper, Reinhart, David, Capodanno, Ben, Truong, Melissa, Schwabe-Fry, Kristen, Kuchta, Kayla, Pfau, Brian, Acker, Zack, Lee, Jover, Sibley, Thomas R, McDermot, Evan, Rodriguez-Salas, Leslie, Stone, Jeremy, Gamboa, Luis, Han, Peter D, Adler, Amanda, Waghmare, Alpana, Jackson, Michael L, Famulare, Michael, Shendure, Jay, Bedford, Trevor, Chu, Helen Y, Englund, Janet A, Starita, Lea M, Viboud, Cécile
Published in Nature communications (16.05.2024)
Published in Nature communications (16.05.2024)
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Journal Article
DNA repair function scores for 2172 variants in the BRCA1 amino-terminus
Diabate, Mariame, Islam, Muhtadi M, Nagy, Gregory, Banerjee, Tapahsama, Dhar, Shruti, Smith, Nahum, Adamovich, Aleksandra I, Starita, Lea M, Parvin, Jeffrey D
Published in PLoS genetics (14.08.2023)
Published in PLoS genetics (14.08.2023)
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Journal Article
Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation
Gelman, Hannah, Dines, Jennifer N, Berg, Jonathan, Berger, Alice H, Brnich, Sarah, Hisama, Fuki M, James, Richard G, Rubin, Alan F, Shendure, Jay, Shirts, Brian, Fowler, Douglas M, Starita, Lea M
Published in Genome medicine (20.12.2019)
Published in Genome medicine (20.12.2019)
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Journal Article
Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county
Paredes, Miguel I, Perofsky, Amanda C, Frisbie, Lauren, Moncla, Louise H, Roychoudhury, Pavitra, Xie, Hong, Bakhash, Shah A Mohamed, Kong, Kevin, Arnould, Isabel, Nguyen, Tien V, Wendm, Seffir T, Hajian, Pooneh, Ellis, Sean, Mathias, Patrick C, Greninger, Alexander L, Starita, Lea M, Frazar, Chris D, Ryke, Erica, Zhong, Weizhi, Gamboa, Luis, Threlkeld, Machiko, Lee, Jover, Stone, Jeremy, McDermot, Evan, Truong, Melissa, Shendure, Jay, Oltean, Hanna N, Viboud, Cécile, Chu, Helen, Müller, Nicola F, Bedford, Trevor
Published in PLoS pathogens (01.03.2024)
Published in PLoS pathogens (01.03.2024)
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Evaluation of a novel university-based testing platform to increase access to SARS-CoV-2 testing during the COVID-19 pandemic in a cohort study
Bennett, Julia Catherine, O’Hanlon, Jessica, Acker, Zachary, Han, Peter D, McDonald, Devon, Wright, Tessa, Luiten, Kyle G, Regelbrugge, Lani, McCaffrey, Kathryn M, Pfau, Brian, Wolf, Caitlin R, Gottlieb, Geoffrey S, Hughes, James P, Carone, Marco, Starita, Lea M, Chu, Helen Y, Weil, Ana A
Published in BMJ open (04.06.2024)
Published in BMJ open (04.06.2024)
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Journal Article
Human Parainfluenza Virus in Homeless Shelters before and during the COVID-19 Pandemic, Washington, USA
Chow, Eric J, Casto, Amanda M, Sampoleo, Reigran, Mills, Margaret G, Han, Peter D, Xie, Hong, Pfau, Brian, Nguyen, Tien V, Sereewit, Jaydee, Rogers, Julia H, Cox, Sarah N, Rolfes, Melissa A, Ogokeh, Constance, Mosites, Emily, Uyeki, Timothy M, Greninger, Alexander L, Hughes, James P, Shim, M Mia, Sugg, Nancy, Duchin, Jeffrey S, Starita, Lea M, Englund, Janet A, Roychoudhury, Pavitra, Chu, Helen Y
Published in Emerging infectious diseases (01.11.2022)
Published in Emerging infectious diseases (01.11.2022)
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Journal Article
The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology
Chu, Helen Y, Boeckh, Michael, Englund, Janet A, Famulare, Michael, Lutz, Barry, Nickerson, Deborah A, Rieder, Mark, Starita, Lea M, Adler, Amanda, Brandstetter, Elisabeth, Frazer, Chris D, Han, Peter D, Gulati, Reena K, Hadfield, James, Jackson, Michael, Kiavand, Anahita, Kimball, Louise E, Lacombe, Kirsten, Newman, Kira, Sibley, Thomas R, Logue, Jennifer K, Lyon, Victoria Rachel, Wolf, Caitlin R, Zigman Suchsland, Monica, Shendure, Jay, Bedford, Trevor
Published in BMJ open (07.10.2020)
Published in BMJ open (07.10.2020)
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Journal Article
Functional Analysis of BARD1 Missense Variants in Homology-Directed Repair of DNA Double Strand Breaks
Lee, Cindy, Banerjee, Tapahsama, Gillespie, Jessica, Ceravolo, Amanda, Parvinsmith, Matthew R., Starita, Lea M., Fields, Stanley, Toland, Amanda E., Parvin, Jeffrey D.
Published in Human mutation (01.12.2015)
Published in Human mutation (01.12.2015)
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Journal Article
Sites of ubiquitin attachment in Saccharomyces cerevisiae
Starita, Lea M., Lo, Russell S., Eng, Jimmy K., von Haller, Priska D., Fields, Stanley
Published in Proteomics (Weinheim) (01.01.2012)
Published in Proteomics (Weinheim) (01.01.2012)
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Journal Article
Multiplex Target-Redundant RT-LAMP for Robust Detection of SARS-CoV-2 Using Fluorescent Universal Displacement Probes
Kline, Enos C, Panpradist, Nuttada, Hull, Ian T, Wang, Qin, Oreskovic, Amy K, Han, Peter D, Starita, Lea M, Lutz, Barry R
Published in Microbiology spectrum (31.08.2022)
Published in Microbiology spectrum (31.08.2022)
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