Integrative detection and analysis of structural variation in cancer genomes
Dixon, Jesse R., Xu, Jie, Dileep, Vishnu, Zhan, Ye, Song, Fan, Le, Victoria T., Yardımcı, Galip Gürkan, Chakraborty, Abhijit, Bann, Darrin V., Wang, Yanli, Clark, Royden, Zhang, Lijun, Yang, Hongbo, Liu, Tingting, Iyyanki, Sriranga, An, Lin, Pool, Christopher, Sasaki, Takayo, Rivera-Mulia, Juan Carlos, Ozadam, Hakan, Lajoie, Bryan R., Kaul, Rajinder, Buckley, Michael, Lee, Kristen, Diegel, Morgan, Pezic, Dubravka, Ernst, Christina, Hadjur, Suzana, Odom, Duncan T., Stamatoyannopoulos, John A., Broach, James R., Hardison, Ross C., Ay, Ferhat, Noble, William Stafford, Dekker, Job, Gilbert, David M., Yue, Feng
Published in Nature genetics (01.10.2018)
Published in Nature genetics (01.10.2018)
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Journal Article
Structural variants drive context-dependent oncogene activation in cancer
Xu, Zhichao, Lee, Dong-Sung, Chandran, Sahaana, Le, Victoria T., Bump, Rosalind, Yasis, Jean, Dallarda, Sofia, Marcotte, Samantha, Clock, Benjamin, Haghani, Nicholas, Cho, Chae Yun, Akdemir, Kadir C., Tyndale, Selene, Futreal, P. Andrew, McVicker, Graham, Wahl, Geoffrey M., Dixon, Jesse R.
Published in Nature (London) (15.12.2022)
Published in Nature (London) (15.12.2022)
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Journal Article
Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure
Akdemir, Kadir C., Le, Victoria T., Kim, Justin M., Killcoyne, Sarah, King, Devin A., Lin, Ya-Ping, Tian, Yanyan, Inoue, Akira, Amin, Samirkumar B., Robinson, Frederick S., Nimmakayalu, Manjunath, Herrera, Rafael E., Lynn, Erica J., Chan, Kin, Seth, Sahil, Klimczak, Leszek J., Gerstung, Moritz, Gordenin, Dmitry A., O’Brien, John, Li, Lei, Deribe, Yonathan Lissanu, Verhaak, Roel G., Campbell, Peter J., Fitzgerald, Rebecca, Morrison, Ashby J., Dixon, Jesse R., Andrew Futreal, P.
Published in Nature genetics (01.11.2020)
Published in Nature genetics (01.11.2020)
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Journal Article
Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer
Akdemir, Kadir C., Le, Victoria T., Chandran, Sahaana, Li, Yilong, Verhaak, Roel G., Beroukhim, Rameen, Campbell, Peter J., Chin, Lynda, Dixon, Jesse R., Futreal, P. Andrew
Published in Nature genetics (01.06.2023)
Published in Nature genetics (01.06.2023)
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Journal Article
Process-specific somatic mutation distributions vary with three-dimensional genome structure
Akdemir, Kadir C, Le, Victoria T, Killcoyne, Sarah, King, Devin A, Li, Ya-Ping, Lian, Yanyan, Inoue, Akire, Amin, Samir, Robinson, Frederick S, Herrera, Rafael E, Lynn, Erica J, Chan, Kin, Sahil Seth, Klimczak, Leszek J, Gerstung, Moritz, Gordenin, Dmitry A, O'brien, John, Li, Lei, Verhaak, Roel G, Campbell, Peter, Fitzgerald, Rebecca, Morrison, Ashby J, Dixon, Jesse R, Futreal, Andrew
Published in bioRxiv (25.09.2018)
Published in bioRxiv (25.09.2018)
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Paper
An Integrative Framework For Detecting Structural Variations In Cancer Genomes
Dixon, Jesse, Xu, Jie, Vishnu Dileep, Ye Zhan, Song, Fan, Le, Victoria T, Galip Gurkan Yardimci, Chakraborty, Abhijit, Bann, Darrin V, Wang, Yanli, Clark, Royden, Zhang, Lijun, Yang, Hongbo, Liu, Tingting, Iyyanki, Sriranga, Lin, An, Pool, Christopher, Sasaki, Takayo, Rivera Mulia, Juan Carlos, Ozadam, Hakan, Lajoie, Bryan R, Kaul, Rajinder, Buckley, Michael, Lee, Kristen, Diegel, Morgan, Pezic, Dubravka, Ernst, Christina, Hadjur, Suzana, Odom, Duncan T, Stamatoyannopoulos, John A, Broach, James R, Hardison, Ross, Ay, Ferhat, William Stafford Noble, Dekker, Job, Gilbert, David M, Feng, Yue
Published in bioRxiv (28.03.2017)
Published in bioRxiv (28.03.2017)
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