The emergence of SARS-CoV-2 in Europe and North America
Worobey, Michael, Pekar, Jonathan, Larsen, Brendan B, Nelson, Martha I, Hill, Verity, Joy, Jeffrey B, Rambaut, Andrew, Suchard, Marc A, Wertheim, Joel O, Lemey, Philippe
Published in Science (30.10.2020)
Published in Science (30.10.2020)
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Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States
Washington, Nicole L., Gangavarapu, Karthik, Zeller, Mark, Bolze, Alexandre, Cirulli, Elizabeth T., Schiabor Barrett, Kelly M., Larsen, Brendan B., Anderson, Catelyn, White, Simon, Cassens, Tyler, Jacobs, Sharoni, Levan, Geraint, Nguyen, Jason, Ramirez, Jimmy M., Rivera-Garcia, Charlotte, Sandoval, Efren, Wang, Xueqing, Wong, David, Spencer, Emily, Robles-Sikisaka, Refugio, Kurzban, Ezra, Hughes, Laura D., Deng, Xianding, Wang, Candace, Servellita, Venice, Valentine, Holly, De Hoff, Peter, Seaver, Phoebe, Sathe, Shashank, Gietzen, Kimberly, Sickler, Brad, Antico, Jay, Hoon, Kelly, Liu, Jingtao, Harding, Aaron, Bakhtar, Omid, Basler, Tracy, Austin, Brett, MacCannell, Duncan, Isaksson, Magnus, Febbo, Phillip G., Becker, David, Laurent, Marc, McDonald, Eric, Yeo, Gene W., Knight, Rob, Laurent, Louise C., de Feo, Eileen, Worobey, Michael, Chiu, Charles Y., Suchard, Marc A., Lu, James T., Lee, William, Andersen, Kristian G.
Published in Cell (13.05.2021)
Published in Cell (13.05.2021)
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A near full-length HIV-1 genome from 1966 recovered from formalin-fixed paraffin-embedded tissue
Gryseels, Sophie, Watts, Thomas D., Mpolesha, Jean-Marie Kabongo, Larsen, Brendan B., Lemey, Philippe, Muyembe-Tamfum, Jean-Jacques, Teuwen, Dirk E., Worobey, Michael
Published in Proceedings of the National Academy of Sciences - PNAS (02.06.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (02.06.2020)
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Coevolutionary Analysis Implicates Toll-Like Receptor 9 in Papillomavirus Restriction
King, Kelly, Larsen, Brendan B, Gryseels, Sophie, Richet, Cécile, Kraberger, Simona, Jackson, Robert, Worobey, Michael, Harrison, Joseph S, Varsani, Arvind, Van Doorslaer, Koenraad
Published in mBio (26.04.2022)
Published in mBio (26.04.2022)
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HIV-1 Conserved-Element Vaccines: Relationship between Sequence Conservation and Replicative Capacity
Rolland, Morgane, Manocheewa, Siriphan, Swain, J Victor, Lanxon-Cookson, Erinn C, Kim, Moon, Westfall, Dylan H, Larsen, Brendan B, Gilbert, Peter B, Mullins, James I
Published in Journal of Virology (01.05.2013)
Published in Journal of Virology (01.05.2013)
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Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection
Iyer, Shyamala, Casey, Eleanor, Bouzek, Heather, Kim, Moon, Deng, Wenjie, Larsen, Brendan B, Zhao, Hong, Bumgarner, Roger E, Rolland, Morgane, Mullins, James I
Published in PloS one (28.08.2015)
Published in PloS one (28.08.2015)
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Evolution and Diversity of Bat and Rodent Paramyxoviruses from North America
Larsen, Brendan B, Gryseels, Sophie, Otto, Hans W, Worobey, Michael
Published in Journal of virology (09.02.2022)
Published in Journal of virology (09.02.2022)
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Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity [version 2; peer review: 2 approved]
Bolyen, Evan, Dillon, Matthew R, Bokulich, Nicholas A, Ladner, Jason T, Larsen, Brendan B, Hepp, Crystal M, Lemmer, Darrin, Sahl, Jason W, Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G, Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M, Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
Published in F1000 research (2020)
Published in F1000 research (2020)
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Improved detection of rare HIV-1 variants using 454 pyrosequencing
Larsen, Brendan B, Chen, Lennie, Maust, Brandon S, Kim, Moon, Zhao, Hong, Deng, Wenjie, Westfall, Dylan, Beck, Ingrid, Frenkel, Lisa M, Mullins, James I
Published in PloS one (02.10.2013)
Published in PloS one (02.10.2013)
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Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection
Wagner, Thor A., McLaughlin, Sherry, Garg, Kavita, Cheung, Charles Y. K., Larsen, Brendan B., Styrchak, Sheila, Huang, Hannah C., Edlefsen, Paul T., Mullins, James I., Frenkel, Lisa M.
Published in Science (American Association for the Advancement of Science) (01.08.2014)
Published in Science (American Association for the Advancement of Science) (01.08.2014)
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Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2
ROLLAND, Morgane, EDLEFSEN, Paul T, AHMED, Hasan, JURASKA, Michal, CHEN, Lennie, KONOPA, Philip, NARIYA, Snehal, STODDARD, Julia N, WONG, Kim, HONG ZHAO, WENJIE DENG, MAUST, Brandon S, LARSEN, Brendan B, BOSE, Meera, HOWELL, Shana, BATES, Adam, LAZZARO, Michelle, SULLIVAN, Annemarie O', LEI, Esther, BRADFIELD, Andrea, IBITAMUNO, Grace, ASSAWADARACHAI, Vatcharain, O'CONNELL, Robert J, TOVANABUTR, Sodsai, DESOUZA, Mark S, NITAYAPHAN, Sorachai, RERKS-NGARM, Supachai, ROBB, Merlin L, MCLELLAN, Jason S, GEORGIEV, Ivelin, KWONG, Peter D, CARLSON, Jonathan M, MICHAEL, Nelson L, SCHIEF, William R, SANDERS-BUELL, Eric, GILBERT, Peter B, MULLINS, James I, KIM, Jerome H, HERTZ, Tomer, DECAMP, Allan C, CARRICO, Chris, MENIS, Sergey, MAGARET, Craig A
Published in Nature (London) (18.10.2012)
Published in Nature (London) (18.10.2012)
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Using archived and biocollection samples towards deciphering the DNA virus diversity associated with rodent species in the families cricetidae and heteromyidae
Lund, Michael C., Larsen, Brendan B., Rowsey, Dakota M., Otto, Hans W., Gryseels, Sophie, Kraberger, Simona, Custer, Joy M., Steger, Laura, Yule, Kelsey M., Harris, Robin E., Worobey, Michael, Van Doorslaer, Koenraad, Upham, Nathan S., Varsani, Arvind
Published in Virology (New York, N.Y.) (01.08.2023)
Published in Virology (New York, N.Y.) (01.08.2023)
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Discovery of three cycloviruses in fecal samples from silver-haired bats (Lasionycteris noctivagans) in Arizona (USA)
Harding, Ciara, Larsen, Brendan B., Gryseels, Sophie, Otto, Hans W., Suazo, Crystal, Kraberger, Simona, Upham, Nathan S., Worobey, Michael, Van Doorslaer, Koenraad, Varsani, Arvind
Published in Archives of virology (01.12.2022)
Published in Archives of virology (01.12.2022)
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Diverse DNA virus genomes identified in fecal samples of Mexican free-tailed bats (Tadarida brasiliensis) captured in Chiricahua Mountains of southeast Arizona (USA)
Harding, Ciara, Larsen, Brendan B., Otto, Hans W., Potticary, Ahva L., Kraberger, Simona, Custer, Joy M., Suazo, Crystal, Upham, Nathan S., Worobey, Michael, Van Doorslaer, Koenraad, Varsani, Arvind
Published in Virology (New York, N.Y.) (01.03.2023)
Published in Virology (New York, N.Y.) (01.03.2023)
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Fitness-Balanced Escape Determines Resolution of Dynamic Founder Virus Escape Processes in HIV-1 Infection
Sunshine, Justine E, Larsen, Brendan B, Maust, Brandon, Casey, Ellie, Deng, Wenje, Chen, Lennie, Westfall, Dylan H, Kim, Moon, Zhao, Hong, Ghorai, Suvankar, Lanxon-Cookson, Erinn, Rolland, Morgane, Collier, Ann C, Maenza, Janine, Mullins, James I, Frahm, Nicole
Published in Journal of virology (01.10.2015)
Published in Journal of virology (01.10.2015)
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Analysis of HLA A02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial
Gartland, Andrew J, Li, Sue, McNevin, John, Tomaras, Georgia D, Gottardo, Raphael, Janes, Holly, Fong, Youyi, Morris, Daryl, Geraghty, Daniel E, Kijak, Gustavo H, Edlefsen, Paul T, Frahm, Nicole, Larsen, Brendan B, Tovanabutra, Sodsai, Sanders-Buell, Eric, deCamp, Allan C, Magaret, Craig A, Ahmed, Hasan, Goodridge, Jodie P, Chen, Lennie, Konopa, Philip, Nariya, Snehal, Stoddard, Julia N, Wong, Kim, Zhao, Hong, Deng, Wenjie, Maust, Brandon S, Bose, Meera, Howell, Shana, Bates, Adam, Lazzaro, Michelle, O'Sullivan, Annemarie, Lei, Esther, Bradfield, Andrea, Ibitamuno, Grace, Assawadarachai, Vatcharain, O'Connell, Robert J, deSouza, Mark S, Nitayaphan, Sorachai, Rerks-Ngarm, Supachai, Robb, Merlin L, Sidney, John, Sette, Alessandro, Zolla-Pazner, Susan, Montefiori, David, McElrath, M Juliana, Mullins, James I, Kim, Jerome H, Gilbert, Peter B, Hertz, Tomer
Published in Journal of virology (01.08.2014)
Published in Journal of virology (01.08.2014)
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Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial
Edlefsen, Paul T, Rolland, Morgane, Hertz, Tomer, Tovanabutra, Sodsai, Gartland, Andrew J, deCamp, Allan C, Magaret, Craig A, Ahmed, Hasan, Gottardo, Raphael, Juraska, Michal, McCoy, Connor, Larsen, Brendan B, Sanders-Buell, Eric, Carrico, Chris, Menis, Sergey, Kijak, Gustavo H, Bose, Meera, Arroyo, Miguel A, O'Connell, Robert J, Nitayaphan, Sorachai, Pitisuttithum, Punnee, Kaewkungwal, Jaranit, Rerks-Ngarm, Supachai, Robb, Merlin L, Kirys, Tatsiana, Georgiev, Ivelin S, Kwong, Peter D, Scheffler, Konrad, Pond, Sergei L Kosakovsky, Carlson, Jonathan M, Michael, Nelson L, Schief, William R, Mullins, James I, Kim, Jerome H, Gilbert, Peter B
Published in PLoS computational biology (01.02.2015)
Published in PLoS computational biology (01.02.2015)
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Dendritic cells restore CD8+ T cell reactivity to autologous HIV-1
Smith, Kellie N, Mailliard, Robbie B, Larsen, Brendan B, Wong, Kim, Gupta, Phalguni, Mullins, James I, Rinaldo, Charles R
Published in Journal of virology (01.09.2014)
Published in Journal of virology (01.09.2014)
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