Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons
Smid, Marcel, Coebergh van den Braak, Robert R J, van de Werken, Harmen J G, van Riet, Job, van Galen, Anne, de Weerd, Vanja, van der Vlugt-Daane, Michelle, Bril, Sandra I, Lalmahomed, Zarina S, Kloosterman, Wigard P, Wilting, Saskia M, Foekens, John A, IJzermans, Jan N M, Martens, John W M, Sieuwerts, Anieta M
Published in BMC bioinformatics (22.06.2018)
Published in BMC bioinformatics (22.06.2018)
Get full text
Journal Article
Impact of low skeletal muscle mass and density on short and long-term outcome after resection of stage I-III colorectal cancer
van Vugt, Jeroen L.A., Coebergh van den Braak, Robert R.J., Lalmahomed, Zarina S., Vrijland, Wietske W., Dekker, Jan W.T., Zimmerman, David D.E., Vles, Wouter J., Coene, Peter-Paul L.O., IJzermans, Jan N.M.
Published in European journal of surgical oncology (01.09.2018)
Published in European journal of surgical oncology (01.09.2018)
Get full text
Journal Article
A Systematic Analysis of Oncogenic Gene Fusions in Primary Colon Cancer
Kloosterman, Wigard P, Coebergh van den Braak, Robert R J, Pieterse, Mark, van Roosmalen, Markus J, Sieuwerts, Anieta M, Stangl, Christina, Brunekreef, Ronne, Lalmahomed, Zarina S, Ooft, Salo, van Galen, Anne, Smid, Marcel, Lefebvre, Armel, Zwartkruis, Fried, Martens, John W M, Foekens, John A, Biermann, Katharina, Koudijs, Marco J, Ijzermans, Jan N M, Voest, Emile E
Published in Cancer research (Chicago, Ill.) (15.07.2017)
Published in Cancer research (Chicago, Ill.) (15.07.2017)
Get full text
Journal Article
Outcome of Microscopic Incomplete Resection (R1) of Colorectal Liver Metastases in the Era of Neoadjuvant Chemotherapy
Ayez, Ninos, Lalmahomed, Zarina S., Eggermont, Alexander M. M., Ijzermans, Jan N. M., de Jonge, Jeroen, van Montfort, Kees, Verhoef, Cornelis
Published in Annals of surgical oncology (01.05.2012)
Published in Annals of surgical oncology (01.05.2012)
Get full text
Journal Article
High mRNA expression of splice variant SYK short correlates with hepatic disease progression in chemonaive lymph node negative colon cancer patients
Coebergh van den Braak, Robert R J, Sieuwerts, Anieta M, Kandimalla, Raju, Lalmahomed, Zarina S, Bril, Sandra I, van Galen, Anne, Smid, Marcel, Biermann, Katharina, van Krieken, J Han J M, Kloosterman, Wigard P, Foekens, John A, Goel, Ajay, Martens, John W M, IJzermans, Jan N M
Published in PloS one (28.09.2017)
Published in PloS one (28.09.2017)
Get full text
Journal Article
Collagen peptides in urine: a new promising biomarker for the detection of colorectal liver metastases
Bröker, Mirelle E E, Lalmahomed, Zarina S, Roest, Henk P, van Huizen, Nick A, Dekker, Lennard J M, Calame, Wim, Verhoef, Cornelis, Ijzermans, Jan N M, Luider, Theo M
Published in PloS one (16.08.2013)
Published in PloS one (16.08.2013)
Get full text
Journal Article
Circulating tumor cells and sample size: the more, the better
Lalmahomed, Zarina S, Kraan, Jaco, Gratama, Jan W, Mostert, Bianca, Sleijfer, Stefan, Verhoef, Cornelis
Published in Journal of clinical oncology (10.06.2010)
Published in Journal of clinical oncology (10.06.2010)
Get full text
Journal Article
Confirmation of a metastasis-specific microRNA signature in primary colon cancer
Coebergh van den Braak, Robert R. J, Sieuwerts, Anieta M., Lalmahomed, Zarina S., Smid, Marcel, Wilting, Saskia M., Bril, Sandra I., Xiang, Shanshan, van der Vlugt-Daane, Michelle, de Weerd, Vanja, van Galen, Anne, Biermann, Katharina, van Krieken, J. Han J. M, Kloosterman, Wigard P., Foekens, John A., Martens, John W. M., IJzermans, Jan N. M.
Published in Scientific reports (27.03.2018)
Published in Scientific reports (27.03.2018)
Get full text
Journal Article
Is the Clinical Risk Score for Patients with Colorectal Liver Metastases Still Useable in the Era of Effective Neoadjuvant Chemotherapy?
Ayez, Ninos, Lalmahomed, Zarina S., van der Pool, Anne E. M., Vergouwe, Yvonne, van Montfort, Kees, de Jonge, Jeroen, Eggermont, Alexander M. M., IJzermans, Jan N. M., Verhoef, Cornelis
Published in Annals of surgical oncology (01.10.2011)
Published in Annals of surgical oncology (01.10.2011)
Get full text
Journal Article
Anatomical Versus Nonanatomical Resection of Colorectal Liver Metastases: Is There a Difference in Surgical and Oncological Outcome?
Lalmahomed, Zarina S., Ayez, Ninos, van der Pool, Anne E. M., Verheij, Joanne, IJzermans, Jan N. M., Verhoef, Cornelis
Published in World journal of surgery (01.03.2011)
Published in World journal of surgery (01.03.2011)
Get full text
Journal Article
Completeness of pathology reports in stage II colorectal cancer
Büttner, Stefan, Lalmahomed, Zarina S., Coebergh van den Braak, Robert R. J., Hansen, Bettina E., Coene, Peter Paul L. O., Dekker, Jan Willem T., Zimmerman, David D. E., Tetteroo, Geert W. M., Vles, Wouter J., Vrijland, Wietske W., Fleischeuer, Ruth E. M., van der Wurff, Anneke A. M., Kliffen, Mike, Torenbeek, Rolf, Meijers, J. H. Carel, Doukas, Michael, IJzermans, Jan N. M.
Published in Acta chirurgica belgica (04.05.2017)
Published in Acta chirurgica belgica (04.05.2017)
Get full text
Journal Article
Hydroxylated collagen peptide in urine as biomarker for detecting colorectal liver metastases
Lalmahomed, Zarina S, Bröker, Mirelle Ee, van Huizen, Nick A, Coebergh van den Braak, Robert R J, Dekker, Lennard Jm, Rizopoulos, Dimitris, Verhoef, Cornelis, Steyerberg, Ewout W, Luider, Theo M, IJzermans, Jan Nm
Published in American journal of cancer research (01.01.2016)
Get full text
Published in American journal of cancer research (01.01.2016)
Journal Article
Trends in treatment for synchronous colorectal liver metastases: Differences in outcome before and after 2000
van der Pool, Anne E.M., Lalmahomed, Zarina S., de Wilt, Johannes H.W., Eggermont, Alexander M.M., Ijzermans, Jan N.M., Verhoef, Cornelis
Published in Journal of surgical oncology (01.10.2010)
Published in Journal of surgical oncology (01.10.2010)
Get full text
Journal Article
Abstract 2530: Validation and pathway analysis of a metastasis-specific microRNA signature in primary colon cancer
Braak, Robert R. Coebergh van den, Sieuwerts, Anieta M., Lalmahomed, Zarina S., Smid, Marcel, Weerd, Vanja de, Daane, Michelle van der Vlugt, Galen, Anne van, Xiang, Shanshan, Biermann, Katharina, Foekens, John A., Martens, John W., IJzermans, Jan N.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Get full text
Journal Article
Abstract 4856: High mRNA expression of splice variant SYK short correlates with poor hepatic metastasis free survival in untreated lymph node negative colon cancer patients
Braak, Robert R. Coebergh van den, Sieuwerts, Anieta M., Lalmahomed, Zarina S., Bril, Sandra, Timmermans, Annemieke M., Weerd, Vanja de, Vlugt - Daane, Michelle van der, Galen, Anne van, Xiang, Shanshan, Biermann, Katharina, Foekens, John A., Martens, John W., IJzermans, Jan N.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Get full text
Journal Article
A hydroxylated collagen peptide in urine as biomarker for the detection of colorectal liver metastases
Coebergh van den Braak, Robert R.J., Lalmahomed, Zarina S., Bröker, Mirelle E., van Huizen, Nick A., Dekker, Lennard J.M., Verhoef, Cornelis, Steyerberg, Ewout W., Rizopoulos, Dimitris, Luider, Theo M., IJzermans, Jan N.M.
Published in Journal of clinical oncology (20.05.2016)
Published in Journal of clinical oncology (20.05.2016)
Get full text
Journal Article
Abstract 490: Identification of oncogenic gene fusions in primary colon cancers
Braak, Robert R. Coebergh van den, Kloosterman, Wigard P., Pieterse, Mark, Roosmalen, Markus van, Sieuwerts, Anieta M., Stangl, Christina, Brunekreef, Ronne, Lalmahomed, Zarina S., Ooft, Salo, Galen, Anne van, Smid, Marcel, Lefebvre, Armel, Zwartkruis, Fried J., Martens, John W., Foekens, John A., Biermann, Katharina, Koudijs, Marco J., IJzermans, Jan N., Voest, Emile E.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Get full text
Journal Article
SYK(S) isoform as a prognostic marker for short liver metastasis free survival in patients with lymph node negative colon cancer
Coebergh van den Braak, Robert R.J., Sieuwerts, Anieta M., Lalmahomed, Zarina S., Bril, Sandra I., Timmermans, Mieke A., de Weerd, Vanja, van der Vlugt-Daane, Michelle, van Galen, Anne M., Xiang, Shanshan, Biermann, Katharina, Martens, John W. M., Foekens, John A., IJzermans, Jan N.M.
Published in Journal of clinical oncology (20.05.2016)
Published in Journal of clinical oncology (20.05.2016)
Get full text
Journal Article