Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives
Dutta, Nivedita, Deb, Indrajit, Sarzynska, Joanna, Lahiri, Ansuman
Published in Journal of computer-aided molecular design (01.03.2022)
Published in Journal of computer-aided molecular design (01.03.2022)
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Journal Article
Genome wide gene expression regulation by HIP1 Protein Interactor, HIPPI: prediction and validation
Datta, Moumita, Choudhury, Ananyo, Lahiri, Ansuman, Bhattacharyya, Nitai P
Published in BMC genomics (26.09.2011)
Published in BMC genomics (26.09.2011)
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Journal Article
Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and 1-methylpseudouridine within RNA duplexes
Dutta, Nivedita, Sarzynska, Joanna, Deb, Indrajit, Lahiri, Ansuman
Published in Physical chemistry chemical physics : PCCP (03.01.2024)
Published in Physical chemistry chemical physics : PCCP (03.01.2024)
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Journal Article
Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N1-methylpseudouridine within RNA duplexes
Dutta, Nivedita, Sarzynska, Joanna, Deb, Indrajit, Lahiri, Ansuman
Published in Physical chemistry chemical physics : PCCP (03.01.2024)
Published in Physical chemistry chemical physics : PCCP (03.01.2024)
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Journal Article
Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N 1-methylpseudouridine within RNA duplexes
Dutta, Nivedita, Sarzynska, Joanna, Deb, Indrajit, Lahiri, Ansuman
Published in Physical chemistry chemical physics : PCCP (03.01.2024)
Published in Physical chemistry chemical physics : PCCP (03.01.2024)
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Journal Article
Molecular Dynamics Simulation of the Conformational Preferences of Pseudouridine Derivatives: Improving the Distribution in the Glycosidic Torsion Space
Dutta, Nivedita, Sarzynska, Joanna, Lahiri, Ansuman
Published in Journal of chemical information and modeling (26.10.2020)
Published in Journal of chemical information and modeling (26.10.2020)
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Journal Article
Inosine and its methyl derivatives: Occurrence, biogenesis, and function in RNA
Dutta, Nivedita, Deb, Indrajit, Sarzynska, Joanna, Lahiri, Ansuman
Published in Progress in biophysics and molecular biology (01.03.2022)
Published in Progress in biophysics and molecular biology (01.03.2022)
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Journal Article
Ensemble Allosteric Model for the Modified Wobble Hypothesis
Sarkar, Aditya K, Sarzynska, Joanna, Lahiri, Ansuman
Published in The journal of physical chemistry letters (06.08.2020)
Published in The journal of physical chemistry letters (06.08.2020)
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Journal Article
Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N 1-methylpseudouridine within RNA duplexes
Dutta, Nivedita, Sarzynska, Joanna, Deb, Indrajit, Lahiri, Ansuman
Published in Physical chemistry chemical physics : PCCP (13.12.2023)
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Published in Physical chemistry chemical physics : PCCP (13.12.2023)
Journal Article
Inclusion of chrysin in β-cyclodextrin nanocavity and its effect on antioxidant potential of chrysin: A spectroscopic and molecular modeling approach
Chakraborty, Sandipan, Basu, Soumalee, Lahiri, Ansuman, Basak, Soumen
Published in Journal of molecular structure (10.08.2010)
Published in Journal of molecular structure (10.08.2010)
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Journal Article