Learning conditional variational autoencoders with missing covariates
Ramchandran, Siddharth, Tikhonov, Gleb, Lönnroth, Otto, Tiikkainen, Pekka, Lähdesmäki, Harri
Published in Pattern recognition (01.03.2024)
Published in Pattern recognition (01.03.2024)
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Journal Article
TCRconv: predicting recognition between T cell receptors and epitopes using contextualized motifs
Jokinen, Emmi, Dumitrescu, Alexandru, Huuhtanen, Jani, Gligorijević, Vladimir, Mustjoki, Satu, Bonneau, Richard, Heinonen, Markus, Lähdesmäki, Harri
Published in Bioinformatics (Oxford, England) (01.01.2023)
Published in Bioinformatics (Oxford, England) (01.01.2023)
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Journal Article
TSignal: a transformer model for signal peptide prediction
Dumitrescu, Alexandru, Jokinen, Emmi, Paatero, Anja, Kellosalo, Juho, Paavilainen, Ville O, Lähdesmäki, Harri
Published in Bioinformatics (Oxford, England) (30.06.2023)
Published in Bioinformatics (Oxford, England) (30.06.2023)
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Journal Article
Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation
Äijö, Tarmo, Butty, Vincent, Chen, Zhi, Salo, Verna, Tripathi, Subhash, Burge, Christopher B, Lahesmaa, Riitta, Lähdesmäki, Harri
Published in Bioinformatics (Oxford, England) (15.06.2014)
Published in Bioinformatics (Oxford, England) (15.06.2014)
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Journal Article
The effect of music performance on the transcriptome of professional musicians
Kanduri, Chakravarthi, Kuusi, Tuire, Ahvenainen, Minna, Philips, Anju K, Lähdesmäki, Harri, Järvelä, Irma
Published in Scientific reports (25.03.2015)
Published in Scientific reports (25.03.2015)
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Journal Article
Data-driven mechanistic analysis method to reveal dynamically evolving regulatory networks
Intosalmi, Jukka, Nousiainen, Kari, Ahlfors, Helena, Lähdesmäki, Harri
Published in Bioinformatics (15.06.2016)
Published in Bioinformatics (15.06.2016)
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Journal Article
snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions
Nousiainen, Kari, Kanduri, Kartiek, Ricaño-Ponce, Isis, Wijmenga, Cisca, Lahesmaa, Riitta, Kumar, Vinod, Lähdesmäki, Harri
Published in Bioinformatics (01.12.2018)
Published in Bioinformatics (01.12.2018)
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Journal Article
A subpopulation model to analyze heterogeneous cell differentiation dynamics
Chan, Yat Hin, Intosalmi, Jukka, Rautio, Sini, Lähdesmäki, Harri
Published in Bioinformatics (Oxford, England) (01.11.2016)
Published in Bioinformatics (Oxford, England) (01.11.2016)
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Journal Article
Notch signaling regulates the differentiation of neural crest from human pluripotent stem cells
Noisa, Parinya, Lund, Carina, Kanduri, Kartiek, Lund, Riikka, Lähdesmäki, Harri, Lahesmaa, Riitta, Lundin, Karolina, Chokechuwattanalert, Hataiwan, Otonkoski, Timo, Tuuri, Timo, Raivio, Taneli
Published in Journal of cell science (01.05.2014)
Published in Journal of cell science (01.05.2014)
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Journal Article
Probabilistic analysis of gene expression measurements from heterogeneous tissues
Erkkilä, Timo, Lehmusvaara, Saara, Ruusuvuori, Pekka, Visakorpi, Tapio, Shmulevich, Ilya, Lähdesmäki, Harri
Published in Bioinformatics (15.10.2010)
Published in Bioinformatics (15.10.2010)
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Journal Article