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Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach

by Barilar, Ivan, Battaglia, Simone, Borroni, Emanuele, Brandao, Angela Pires, Brankin, Alice, Cabibbe, Andrea Maurizio, Carter, Joshua, Chetty, Darren, Cirillo, Daniela Maria, Claxton, Pauline, Clifton, David A., Cohen, Ted, Coronel, Jorge, Crook, Derrick W., Dreyer, Viola, Earle, Sarah G., Escuyer, Vincent, Ferrazoli, Lucilaine, Fowler, Philip W., Gao, George Fu, Gardy, Jennifer, Gharbia, Saheer, Ghisi, Kelen Teixeira, Ghodousi, Arash, Gibertoni Cruz, Ana Luíza, Grandjean, Louis, Grazian, Clara, Groenheit, Ramona, Guthrie, Jennifer L., He, Wencong, Hoffmann, Harald, Hoosdally, Sarah J., Hunt, Martin, Iqbal, Zamin, Ismail, Nazir Ahmed, Jarrett, Lisa, Joseph, Lavania, Jou, Ruwen, Kambli, Priti, Khot, Rukhsar, Knaggs, Jeff, Koch, Anastasia, Kohlerschmidt, Donna, Kouchaki, Samaneh, Lachapelle, Alexander S., Lalvani, Ajit, Lapierre, Simon Grandjean, Laurenson, Ian F., Letcher, Brice, Lin, Wan-Hsuan, Liu, Chunfa, Liu, Dongxin, Malone, Kerri M., Mandal, Ayan, Mansjö, Mikael, Calisto Matias, Daniela Vicente Lucena, Meintjes, Graeme, de Freitas Mendes, Flávia, Merker, Matthias, Mihalic, Marina, Millard, James, Miotto, Paolo, Mistry, Nerges, Moore, David, Musser, Kimberlee A., Ngcamu, Dumisani, Nhung, Hoang Ngoc, Niemann, Stefan, Nilgiriwala, Kayzad Soli, Nimmo, Camus, O’Donnell, Max, Okozi, Nana, Oliveira, Rosangela Siqueira, Omar, Shaheed Vally, Paton, Nicholas, Peto, Timothy E. A., Pinhata, Juliana Maira Watanabe, Plesnik, Sara, Puyen, Zully M., Rabodoarivelo, Marie Sylvianne, Rakotosamimanana, Niaina, Rancoita, Paola M. V., Rathod, Priti, Robinson, Esther Rhiannon, Rodger, Gillian, Rodrigues, Camilla, Rodwell, Timothy C., Roohi, Aysha, Santos-Lazaro, David, Shah, Sanchi, Smith, Grace, Kohl, Thomas Andreas, Solano, Walter, Spitaleri, Andrea, Steyn, Adrie J. C., Supply, Philip, Surve, Utkarsha, Tahseen, Sabira, Thuong, Nguyen Thuy Thuong, Thwaites, Guy
Published in Nature communications (12.01.2024)

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Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis

by Sonnenkalb, Lindsay, Carter, Joshua James, Hunt, Martin, Malone, Kerri Marie, Cirillo, Daniela Maria, Rodrigues, Camilla, Nilgiriwala, Kayzad Soli, Fowler, Philip William, Merker, Matthias, Niemann, Stefan, Barilar, Ivan, Battaglia, Simone, Borroni, Emanuele, Cabibbe, Andrea Maurizio, Carter, Joshua, Cirillo, Daniela Maria, Claxton, Pauline, Coronel, Jorge, Crook, Derrick W, Dreyer, Viola, Earle, Sarah G, Ferrazoli, Lucilaine, Fu Gao, George, Gardy, Jennifer, Gharbia, Saheer, Ghodousi, Arash, Gibertoni Cruz, Ana Luíza, Grandjean, Louis, Groenheit, Ramona, He, Wencong, Hoosdally, Sarah J, Hunt, Martin, Iqbal, Zamin, Ismail, Nazir Ahmed, Jarrett, Lisa, Joseph, Lavania, Jou, Ruwen, Kambli, Priti, Knaggs, Jeff, Koch, Anastasia, Kohlerschmidt, Donna, Kouchaki, Samaneh, Lachapelle, Alexander S, Grandjean Lapierre, Simon, Laurenson, Ian F, Letcher, Brice, Lin, Wan-Hsuan, Liu, Dongxin, Mandal, Ayan, Mansjö, Mikael, Matias, Daniela, Meintjes, Graeme, de Freitas Mendes, Flávia, Merker, Matthias, Millard, James, Miotto, Paolo, Mistry, Nerges, Moore, David, Musser, Kimberlee A, Hoang, Ngoc Nhung, Niemann, Stefan, Nilgiriwala, Kayzad Soli, Nimmo, Camus, Okozi, Nana, Oliveira, Rosangela Siqueira, Omar, Shaheed Vally, Peto, Timothy EA, Watanabe Pinhata, Juliana Maira, Plesnik, Sara, Puyen, Zully M, Rakotosamimanana, Niaina, Rathod, Priti, Rodger, Gillian, Rodrigues, Camilla, Santos-Lazaro, David, Shah, Sanchi, Kohl, Thomas Andreas, Smith, Grace, Solano, Walter, Spitaleri, Andrea, Supply, Philip, Surve, Utkarsha, Tahseen, Sabira, Thuong, Nguyen Thuy Thuong, Thwaites, Guy, Todt, Katharina, Trovato, Alberto, Utpatel, Christian, Van Rie, Annelies, Vijay, Srinivasan, Walker, Timothy M, Walker, Sarah A, Warren, Robin, Werngren, Jim, Wijkander, Maria, Wilkinson, Robert J, Wintringer, Penelope, Yu, Xin Xiao, Zhao, Yanlin, Zhu, Baoli
Published in The Lancet. Microbe (01.05.2023)

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A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics

by Brankin, Alice, Malone, Kerri M., Barilar, Ivan, Battaglia, Simone, Borroni, Emanuele, Pires Brandao, Angela, Cabibbe, Andrea Maurizio, Carter, Joshua, Chetty, Darren, Cirillo, Daniela María, Claxton, Pauline, Clifton, David A., Cohen, Ted, Coronel, Jorge, Crook, Derrick W., Dreyer, Viola, Earle, Sarah G., Escuyer, Vincent, Ferrazoli, Lucilaine, Gāo, George Fú, Gardy, Jennifer, Gharbia, Saheer, Teixeira Ghisi, Kelen, Ghodousi, Arash, Gibertoni Cruz, Ana Lúıza, Grandjean, Louis, Grazian, Clara, Groenheit, Ramona, Guthrie, Jennifer L., He, Wencong, Hoffmann, Harald, J., Sarah Hoosdally, Hunt, Martin, Ismail, Nazir Ahmed, Jarrett, Lisa, Joseph, Lavania, Jou, Ruwen, Kambli, Priti, Khot, Rukhsar, Knaggs, Jeff, Koch, Anastasia, Kohlerschmidt, Donna, Kouchaki, Samaneh, Lachapelle, Alexander S., Lalvani, Ajit, Grandjean Lapierre, Simon, Laurenson, Ian F., Letcher, Brice, Lin, Wan-Hsuan, Liu, Chunfa, Liu, Dongxin, Mandal, Ayan, Mansjö, Mikael, Matias, Daniela, Meintjes, Graeme, de Freitas Mendes, Flávia, Merker, Matthias, Mihalic, Marina, Millard, James, Miotto, Paolo, Mistry, Nerges, Moore, David, Musser, Kimberlee A., Ngcamu, Dumisani, Ngoc Nhung, Hoang, Niemann, Stefan, Soli Nilgiriwala, Kayzad, Nimmo, Camus, O'Donnell, Max, Okozi, Nana, Siqueira Oliveira, Rosangela, Omar, Shaheed Vally, Paton, Nicholas, Peto, Timothy Ea, Watanabe Pinhata, Juliana Maira, Plesnik, Sara, Puyen, Zully M., Rabodoarivelo, Marie Sylvianne, Rakotosamimanana, Niaina, Rancoita, Paola M.V., Rathod, Priti, Robinson, Esther, Rodger, Gillian, Rodrigues, Camilla, Rodwell, Timothy C., Roohi, Aysha, Santos-Lazaro, David, Shah, Sanchi, Kohl, Thomas Andreas, Smith, Grace A., Solano, Walter, Spitaleri, Andrea, Supply, Philip, Steyn, Adrie J.C., Surve, Utkarsha, Tahseen, Sabira, Thuong, Nguyen Thuy, Thwaites, Guy, Todt, Katharina, Trovato, Alberto
Published in PLoS biology (01.08.2022)

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The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis

by Walker, Timothy M, Köser, Claudio U, Knaggs, Jeff, Farhat, Maha R, Cirillo, Daniela Maria, Posey, James, Peto, Timothy EA, Uplekar, Swapna, Laurent, Sacha, Colman, Rebecca E, Nathanson, Carl-Michael, Walker, Ann Sarah, Rodwell, Timothy C, Lalvani, Ajit, Baulard, Alain, Christoffels, Alan, Mendoza-Ticona, Alberto, Trovato, Alberto, Lachapelle, Alexander S, Brankin, Alice, Koch, Anastasia, Brandao, Angela P, Chaiprasert, Angkana, Barbova, Anna, Bainomugisa, Arnold, Rodrigues, Camilla, Nimmo, Camus, Duncan, Carla, Coulter, Christopher, Utpatel, Christian, Liu, Chunfa, Grazian, Clara, Kong, Clare, Köser, Claudio U, Wilson, Daniel J, Jorgensen, Danielle, Crook, Derrick W, van Soolingen, Dick, Barreira, Draurio, Ngcamu, Dumisani, Kelly, Ellis, Roycroft, Emma, Böttger, Erik C, Menardo, Fabrizio, Mendes, Flavia F, Gao, George Fu, Thwaites, Guy, Albert, Heidi, Cox, Helen, Laurenson, Ian F, Barilar, Ivan, Robledo, Jaime, Gardy, Jennifer, Carter, Joshua, Kus, Julianne V, Todt, Katharina, Nilgiriwala, Kayzad S, Ghisi, Kelen T, Malone, Kerri M, Faksri, Kiatichai, Musser, Kimberlee A, Joseph, Lavania, Jarrett, Lisa, Grandjean, Louis, Schito, Marco, Wijkander, Maria, Rabodoarivelo, Marie-Sylvianne, Mihalic, Marina, Hunt, Martin, Egger, Matthias, Wu, Mei-Hua, Mansjö, Mikael, ISMAIL, Nazir, Rakotosamimanana, Niaina, Paton, Nicholas I, Miotto, Paolo, Lapierre, Pascal, Colman, Rebecca E, Wilkinson, Robert J, Diel, Roland, Oliveira, Rosangela S, Khot, Rukhsar, Tahseen, Sabira, Plesnik, Sara, Mitarai, Satoshi, Kohl, Thomas A, Thuong, Nguyen T T, Teo, Tik Ying, Rodwell, Timothy C, William, Timothy, Walker, Timothy M, Surve, Utkarsha, Vijay, Srinivasan, Escuyer, Vincent, Dreyer, Viola, Lin, Wan-Hsuan, van Gemert, Wayne, Yang, Yang, Zhao, Yanlin, Xiao, Yu-Xin
Published in The Lancet. Microbe (01.04.2022)

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