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Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme
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Published in Genome medicine (07.09.2010)
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An optimized isolation of biotinylated cell surface proteins reveals novel players in cancer metastasis
Karhemo, Piia-Riitta, Ravela, Suvi, Laakso, Marko, Ritamo, Ilja, Tatti, Olga, Mäkinen, Selina, Goodison, Steve, Stenman, Ulf-Håkan, Hölttä, Erkki, Hautaniemi, Sampsa, Valmu, Leena, Lehti, Kaisa, Laakkonen, Pirjo
Published in Journal of proteomics (21.12.2012)
Published in Journal of proteomics (21.12.2012)
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Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer
Sahu, Biswajyoti, Laakso, Marko, Ovaska, Kristian, Mirtti, Tuomas, Lundin, Johan, Rannikko, Antti, Sankila, Anna, Turunen, Juha-Pekka, Lundin, Mikael, Konsti, Juho, Vesterinen, Tiina, Nordling, Stig, Kallioniemi, Olli, Hautaniemi, Sampsa, Jänne, Olli A
Published in The EMBO journal (05.10.2011)
Published in The EMBO journal (05.10.2011)
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Identification of sample-specific regulations using integrative network level analysis
Liu, Chengyu, Louhimo, Riku, Laakso, Marko, Lehtonen, Rainer, Hautaniemi, Sampsa
Published in BMC cancer (28.04.2015)
Published in BMC cancer (28.04.2015)
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Anduril 2: upgraded large-scale data integration framework
Cervera, Alejandra, Rantanen, Ville, Ovaska, Kristian, Laakso, Marko, Nuñez-Fontarnau, Javier, Alkodsi, Amjad, Casado, Julia, Facciotto, Chiara, Häkkinen, Antti, Louhimo, Riku, Karinen, Sirkku, Zhang, Kaiyang, Lavikka, Kari, Lyly, Lauri, Pal Singh, Maninder, Hautaniemi, Sampsa
Published in Bioinformatics (01.10.2019)
Published in Bioinformatics (01.10.2019)
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AML associated oncofusion proteins PML-RARA, AML1-ETO and CBFB-MYH11 target RUNX/ETS-factor binding sites to modulate H3ac levels and drive leukemogenesis
Singh, Abhishek A, Mandoli, Amit, Prange, Koen H M, Laakso, Marko, Martens, Joost H A
Published in Oncotarget (21.02.2017)
Published in Oncotarget (21.02.2017)
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Data integration to prioritize drugs using genomics and curated data
Louhimo, Riku, Laakso, Marko, Belitskin, Denis, Klefström, Juha, Lehtonen, Rainer, Hautaniemi, Sampsa
Published in BioData mining (26.05.2016)
Published in BioData mining (26.05.2016)
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Role of RNA binding protein HuR in ductal carcinoma in situ of the breast
Heinonen, Mira, Hemmes, Annabrita, Salmenkivi, Kaisa, Abdelmohsen, Kotb, Vilén, Suvi-Tuuli, Laakso, Marko, Leidenius, Marjut, Salo, Tuula, Hautaniemi, Sampsa, Gorospe, Myriam, Heikkilä, Päivi, Haglund, Caj, Ristimäki, Ari
Published in The Journal of pathology (01.08.2011)
Published in The Journal of pathology (01.08.2011)
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DNA methylation signature (SAM40) identifies subgroups of the Luminal A breast cancer samples with distinct survival
Fleischer, Thomas, Klajic, Jovana, Aure, Miriam Ragle, Louhimo, Riku, Pladsen, Arne V, Ottestad, Lars, Touleimat, Nizar, Laakso, Marko, Halvorsen, Ann Rita, Grenaker Alnæs, Grethe I, Riis, Margit L H, Helland, Åslaug, Hautaniemi, Sampsa, Lønning, Per Eystein, Naume, Bjørn, Børresen-Dale, Anne-Lise, Tost, Jörg, Kristensen, Vessela N
Published in Oncotarget (03.01.2017)
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Germline variation in TP53 regulatory network genes associates with breast cancer survival and treatment outcome
Jamshidi, Maral, Schmidt, Marjanka K., Dörk, Thilo, Garcia‐Closas, Montserrat, Heikkinen, Tuomas, Cornelissen, Sten, van den Broek, Alexandra J., Schürmann, Peter, Meyer, Andreas, Park‐Simon, Tjoung‐Won, Figueroa, Jonine, Sherman, Mark, Lissowska, Jolanta, Keong, Garrett Teoh Hor, Irwanto, Astrid, Laakso, Marko, Hautaniemi, Sampsa, Aittomäki, Kristiina, Blomqvist, Carl, Liu, Jianjun, Nevanlinna, Heli
Published in International journal of cancer (01.05.2013)
Published in International journal of cancer (01.05.2013)
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Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer: FoxA1 in AR pathway and prostate cancer
Sahu, Biswajyoti, Laakso, Marko, Ovaska, Kristian, Mirtti, Tuomas, Lundin, Johan, Rannikko, Antti, Sankila, Anna, Turunen, Juha-Pekka, Lundin, Mikael, Konsti, Juho, Vesterinen, Tiina, Nordling, Stig, Kallioniemi, Olli, Hautaniemi, Sampsa, Jänne, Olli A
Published in The EMBO journal (05.10.2011)
Published in The EMBO journal (05.10.2011)
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Identification of genetic markers with synergistic survival effect in cancer
Louhimo, Riku, Laakso, Marko, Heikkinen, Tuomas, Laitinen, Susanna, Manninen, Pekka, Rogojin, Vladimir, Miettinen, Minna, Blomqvist, Carl, Liu, Jianjun, Nevanlinna, Heli, Hautaniemi, Sampsa
Published in BMC systems biology (2013)
Published in BMC systems biology (2013)
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Germ line variation in TP53 regulatory network genes associates with breast cancer survival and treatment outcome
Jamshidi, Maral, Schmidt, Marjanka K, Dörk, Thilo, Garcia-Closas, Montserrat, Heikkinen, Tuomas, Cornelissen, Sten, van den Broek, Alexandra J, Schürmann, Peter, Meyer, Andreas, Park-Simon, Tjoung-Won, Figueroa, Jonine, Sherman, Mark, Lissowska, Jolanta, Keong, Garrett Teoh Hor, Irwanto, Astrid, Laakso, Marko, Hautaniemi, Sampsa, Aittomäki, Kristiina, Blomqvist, Carl, Liu, Jianjun, Nevalinna, Heli
Published in International journal of cancer (25.10.2012)
Published in International journal of cancer (25.10.2012)
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High frequency of TTK mutations in microsatellite-unstable colorectal cancer and evaluation of their effect on spindle assembly checkpoint
NIITTYMAKI, Iina, GYLFE, Alexandra, NUORVA, Kyosti, MECKLIN, Jukka-Pekka, MÄKINEN, Markus, RISTIMÄKI, Ari, ØRNTOFT, Torben F, HAUTANIEMI, Sampsa, KARHU, Auli, KALLIO, Marko J, AALTONEN, Lauri A, LAINE, Leena, LAAKSO, Marko, LEHTONEN, Heli J, KONDELIN, Johanna, TOLVANEN, Jaana, NOUSIAINEN, Kari, POUWELS, Jeroen, JÄRVINEN, Heikki
Published in Carcinogenesis (New York) (01.03.2011)
Published in Carcinogenesis (New York) (01.03.2011)
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Abstract A57: Nonsense-mediated decay escaping mutations in microsatellite-unstable colorectal cancer
Gylfe, Alexandra, Niittymäki, Iina, Ahonen, Leena, Lehtonen, Heli, Laakso, Marko, Sirkiä, Johanna, Nousiainen, Kari, Pouwels, Jeroen, Järvinen, Heikki, Nuorva, Kyösti, Mecklin, Jukka-Pekka, Ristimäki, Ari, Ørntoft, Torben, Hautaniemi, Sampsa, Karhu, Auli, Kallio, Marko, Aaltonen, Lauri
Published in Cancer research (Chicago, Ill.) (01.12.2009)
Published in Cancer research (Chicago, Ill.) (01.12.2009)
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