Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae
Sato, Trey K, Tremaine, Mary, Parreiras, Lucas S, Hebert, Alexander S, Myers, Kevin S, Higbee, Alan J, Sardi, Maria, McIlwain, Sean J, Ong, Irene M, Breuer, Rebecca J, Avanasi Narasimhan, Ragothaman, McGee, Mick A, Dickinson, Quinn, La Reau, Alex, Xie, Dan, Tian, Mingyuan, Reed, Jennifer L, Zhang, Yaoping, Coon, Joshua J, Hittinger, Chris Todd, Gasch, Audrey P, Landick, Robert
Published in PLoS genetics (14.10.2016)
Published in PLoS genetics (14.10.2016)
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Shallow shotgun sequencing reduces technical variation in microbiome analysis
La Reau, Alex J., Strom, Noah B., Filvaroff, Ellen, Mavrommatis, Konstantinos, Ward, Tonya L., Knights, Dan
Published in Scientific reports (11.05.2023)
Published in Scientific reports (11.05.2023)
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Assessing the relationship between the rumen microbiota and feed efficiency in Nellore steers
Lopes, Déborah Romaskevis Gomes, de Souza Duarte, Márcio, La Reau, Alex J, Chaves, Ibrahim Zuniga, de Oliveira Mendes, Tiago Antônio, Detmann, Edenio, Bento, Cláudia Braga Pereira, Mercadante, Maria Eugênia Zerlotti, Bonilha, Sarah Figueiredo Martins, Suen, Garret, Mantovani, Hilário Cuquetto
Published in Journal of animal science and biotechnology (15.07.2021)
Published in Journal of animal science and biotechnology (15.07.2021)
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The Bacterial and Fungal Microbiota of Nelore Steers Is Dynamic Across the Gastrointestinal Tract and Its Fecal-Associated Microbiota Is Correlated to Feed Efficiency
Lopes, Déborah Romaskevis Gomes, La Reau, Alex J, Duarte, Márcio de Souza, Detmann, Edenio, Bento, Cláudia Braga Pereira, Mercadante, Maria Eugênia Zerlotti, Bonilha, Sarah Figueiredo Martins, Suen, Garret, Mantovani, Hilario Cuquetto
Published in Frontiers in microbiology (25.06.2019)
Published in Frontiers in microbiology (25.06.2019)
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Effect of storage conditions on the stability and fermentability of enzymatic lignocellulosic hydrolysate
Jin, Mingjie, Bothfeld, William, Austin, Samantha, Sato, Trey K., La Reau, Alex, Li, Haibo, Foston, Marcus, Gunawan, Christa, LeDuc, Richard D., Quensen, John F., Mcgee, Mick, Uppugundla, Nirmal, Higbee, Alan, Ranatunga, Ruwan, Donald, Charles W., Bone, Gwen, Ragauskas, Arthur J., Tiedje, James M., Noguera, Daniel R., Dale, Bruce E., Zhang, Yaoping, Balan, Venkatesh
Published in Bioresource technology (01.11.2013)
Published in Bioresource technology (01.11.2013)
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Longitudinal transkingdom gut microbial approach towards decompensation in outpatients with cirrhosis
Bajaj, Jasmohan S, Peña-Rodriguez, Marcela, La Reau, Alex, Phillips, Wendy, Fuchs, Michael, Davis, Brian C, Sterling, Richard K, Sikaroodi, Masoumeh, Fagan, Andrew, Shamsaddini, Amirhossein, Henseler, Zachariah, Ward, Tonya, Puri, Puneet, Lee, Hannah, Gillevet, Patrick M
Published in Gut (01.04.2023)
Published in Gut (01.04.2023)
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A dietary intervention for postmenopausal hot flashes: A potential role of gut microbiome. An exploratory analysis
Kahleova, Hana, Holtz, Danielle N., Strom, Noah, La Reau, Alex, Kolipaka, Sinjana, Schmidt, Natalie, Hata, Ellen, Znayenko-Miller, Tatiana, Holubkov, Richard, Barnard, Neal D.
Published in Complementary therapies in medicine (01.12.2023)
Published in Complementary therapies in medicine (01.12.2023)
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Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover
Parreiras, Lucas S, Breuer, Rebecca J, Avanasi Narasimhan, Ragothaman, Higbee, Alan J, La Reau, Alex, Tremaine, Mary, Qin, Li, Willis, Laura B, Bice, Benjamin D, Bonfert, Brandi L, Pinhancos, Rebeca C, Balloon, Allison J, Uppugundla, Nirmal, Liu, Tongjun, Li, Chenlin, Tanjore, Deepti, Ong, Irene M, Li, Haibo, Pohlmann, Edward L, Serate, Jose, Withers, Sydnor T, Simmons, Blake A, Hodge, David B, Westphall, Michael S, Coon, Joshua J, Dale, Bruce E, Balan, Venkatesh, Keating, David H, Zhang, Yaoping, Landick, Robert, Gasch, Audrey P, Sato, Trey K
Published in PloS one (15.09.2014)
Published in PloS one (15.09.2014)
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Metagenomic Information Recovery from Human Stool Samples Is Influenced by Sequencing Depth and Profiling Method
Santiago-Rodriguez, Tasha M., Garoutte, Aaron, Adams, Emmase, Nasser, Waleed, Ross, Matthew C., La Reau, Alex, Henseler, Zachariah, Ward, Tonya, Knights, Dan, Petrosino, Joseph F., Hollister, Emily B.
Published in Genes (21.11.2020)
Published in Genes (21.11.2020)
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
Zhang, Yaoping, Myers, Kevin S., Place, Michael, Serate, Jose, Xie, Dan, Pohlmann, Edward, La Reau, Alex, Landick, Robert, Sato, Trey K.
Published in Microbiology resource announcements (15.09.2022)
Published in Microbiology resource announcements (15.09.2022)
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Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae
Sato, Trey K, Tremaine, Mary, Parreiras, Lucas S, Hebert, Alexander S, Myers, Kevin S, Higbee, Alan J, Sardi, Maria, McIlwain, Sean J, Ong, Irene M, Breuer, Rebecca J, Narasimhan, Ragothaman Avanasi, McGee, Mick A, Dickinson, Quinn, La Reau, Alex, Xie, Dan, Tian, Mingyuan, Piotrowski, Jeff S, Reed, Jennifer L, Zhang, Yaoping, Coon, Joshua J, Hittinger, Chris Todd, Gasch, Audrey P, Landick, Robert
Published in PLoS genetics (01.11.2016)
Published in PLoS genetics (01.11.2016)
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Journal Article
Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation
Serate, Jose, Xie, Dan, Pohlmann, Edward, Donald, Jr, Charles, Shabani, Mahboubeh, Hinchman, Li, Higbee, Alan, Mcgee, Mick, La Reau, Alex, Klinger, Grace E, Li, Sheena, Myers, Chad L, Boone, Charles, Bates, Donna M, Cavalier, Dave, Eilert, Dustin, Oates, Lawrence G, Sanford, Gregg, Sato, Trey K, Dale, Bruce, Landick, Robert, Piotrowski, Jeff, Ong, Rebecca Garlock, Zhang, Yaoping
Published in Biotechnology for biofuels (14.11.2015)
Published in Biotechnology for biofuels (14.11.2015)
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Journal Article
A Longitudinal Trans-Kingdom Gut Microbial Approach towards Decompensation in Outpatients with Cirrhosis
Bajaj, Jasmohan S, Peňa-Rodriguez, Marcela, Sikaroodi, Masoumeh, Fagan, Andrew, Shamsaddini, Amirhossein, La Reau, Alex, Henseler, Zachariah, Phillips, Wendy, Ward, Tonya, Fuchs, Michael, Puri, Puneet, Davis, Brian C, Lee, Hannah, Sterling, Richard K, Gillevet, Patrick M
Published in Gut (07.11.2022)
Published in Gut (07.11.2022)
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Journal Article
Engineering and Two-Stage Evolution of a Lignocellulosic Hydrolysate-Tolerant Saccharomyces cerevisiae Strain for Anaerobic Fermentation of Xylose from AFEX Pretreated Corn Stover: e107499
Parreiras, Lucas S, Breuer, Rebecca J, Narasimhan, Ragothaman Avanasi, Higbee, Alan J, Reau, Alex La, Tremaine, Mary, Qin, Li, Willis, Laura B, Bice, Benjamin D, Bonfert, Brandi L
Published in PloS one (01.09.2014)
Published in PloS one (01.09.2014)
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Journal Article
Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation
Serate, Jose, Xie, Dan, Pohlmann, Edward, Donald, Jr., Charles, Shabani, Mahboubeh, Hinchman, Li, Higbee, Alan, Mcgee, Mick, La Reau, Alex, Klinger, Grace E., Li, Sheena, Myers, Chad L., Boone, Charles, Bates, Donna M., Cavalier, Dave, Eilert, Dustin, Oates, Lawrence G., Sanford, Gregg, Sato, Trey K., Dale, Bruce, Landick, Robert, Piotrowski, Jeff, Ong, Rebecca Garlock, Zhang, Yaoping
Published in Biotechnology for biofuels (14.11.2015)
Published in Biotechnology for biofuels (14.11.2015)
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