Somatic mutation in single human neurons tracks developmental and transcriptional history
Lodato, Michael A., Woodworth, Mollie B., Lee, Semin, Evrony, Gilad D., Mehta, Bhaven K., Karger, Amir, Lee, Soohyun, Chittenden, Thomas W., D'Gama, Alissa M., Cai, Xuyu, Luquette, Lovelace J., Lee, Eunjung, Park, Peter J., Walsh, Christopher A.
Published in Science (American Association for the Advancement of Science) (02.10.2015)
Published in Science (American Association for the Advancement of Science) (02.10.2015)
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Histone H3K27ac separates active from poised enhancers and predicts developmental state
Creyghton, Menno P., Cheng, Albert W., Welstead, G. Grant, Kooistra, Tristan, Carey, Bryce W., Steine, Eveline J., Hanna, Jacob, Lodato, Michael A., Frampton, Garrett M., Sharp, Phillip A., Boyer, Laurie A., Young, Richard A., Jaenisch, Rudolf
Published in Proceedings of the National Academy of Sciences - PNAS (14.12.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (14.12.2010)
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Functional Integration of Dopaminergic Neurons Directly Converted from Mouse Fibroblasts
Kim, Jongpil, Su, Susan C., Wang, Haoyi, Cheng, Albert W., Cassady, John P., Lodato, Michael A., Lengner, Christopher J., Chung, Chee-Yeun, Dawlaty, Meelad M., Tsai, Li-Huei, Jaenisch, Rudolf
Published in Cell stem cell (04.11.2011)
Published in Cell stem cell (04.11.2011)
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SOX2 co-occupies distal enhancer elements with distinct POU factors in ESCs and NPCs to specify cell state
Lodato, Michael A, Ng, Christopher W, Wamstad, Joseph A, Cheng, Albert W, Thai, Kevin K, Fraenkel, Ernest, Jaenisch, Rudolf, Boyer, Laurie A
Published in PLoS genetics (01.02.2013)
Published in PLoS genetics (01.02.2013)
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Journal Article
Aging and neurodegeneration are associated with increased mutations in single human neurons
Lodato, Michael A, Rodin, Rachel E, Bohrson, Craig L, Coulter, Michael E, Barton, Alison R, Kwon, Minseok, Sherman, Maxwell A, Vitzthum, Carl M, Luquette, Lovelace J, Yandava, Chandri N, Yang, Pengwei, Chittenden, Thomas W, Hatem, Nicole E, Ryu, Steven C, Woodworth, Mollie B, Park, Peter J, Walsh, Christopher A
Published in Science (American Association for the Advancement of Science) (02.02.2018)
Published in Science (American Association for the Advancement of Science) (02.02.2018)
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Somatic genomic changes in single Alzheimer’s disease neurons
Miller, Michael B., Huang, August Yue, Kim, Junho, Zhou, Zinan, Kirkham, Samantha L., Maury, Eduardo A., Ziegenfuss, Jennifer S., Reed, Hannah C., Neil, Jennifer E., Rento, Lariza, Ryu, Steven C., Ma, Chanthia C., Luquette, Lovelace J., Ames, Heather M., Oakley, Derek H., Frosch, Matthew P., Hyman, Bradley T., Lodato, Michael A., Lee, Eunjung Alice, Walsh, Christopher A.
Published in Nature (London) (28.04.2022)
Published in Nature (London) (28.04.2022)
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A drug-inducible transgenic system for direct reprogramming of multiple somatic cell types
Jaenisch, Rudolf, Wernig, Marius, Lengner, Christopher J, Hanna, Jacob, Lodato, Michael A, Steine, Eveline, Foreman, Ruth, Staerk, Judith, Markoulaki, Styliani
Published in Nature biotechnology (01.08.2008)
Published in Nature biotechnology (01.08.2008)
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Journal Article
Persistent DNA damage associated with ATM kinase deficiency promotes microglial dysfunction
Bourseguin, Julie, Cheng, Wen, Talbot, Emily, Hardy, Liana, Lai, Jenny, Jeffries, Ailsa M, Lodato, Michael A, Lee, Eunjung Alice, Khoronenkova, Svetlana V
Published in Nucleic acids research (21.03.2022)
Published in Nucleic acids research (21.03.2022)
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APP gene copy number changes reflect exogenous contamination
Kim, Junho, Zhao, Boxun, Huang, August Yue, Miller, Michael B., Lodato, Michael A., Walsh, Christopher A., Lee, Eunjung Alice
Published in Nature (London) (20.08.2020)
Published in Nature (London) (20.08.2020)
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Journal Article
Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements
Luquette, Lovelace J., Miller, Michael B., Zhou, Zinan, Bohrson, Craig L., Zhao, Yifan, Jin, Hu, Gulhan, Doga, Ganz, Javier, Bizzotto, Sara, Kirkham, Samantha, Hochepied, Tino, Libert, Claude, Galor, Alon, Kim, Junho, Lodato, Michael A., Garaycoechea, Juan I., Gawad, Charles, West, Jay, Walsh, Christopher A., Park, Peter J.
Published in Nature genetics (01.10.2022)
Published in Nature genetics (01.10.2022)
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Journal Article
Prevalence and mechanisms of somatic deletions in single human neurons during normal aging and in DNA repair disorders
Kim, Junho, Huang, August Yue, Johnson, Shelby L., Lai, Jenny, Isacco, Laura, Jeffries, Ailsa M., Miller, Michael B., Lodato, Michael A., Walsh, Christopher A., Lee, Eunjung Alice
Published in Nature communications (07.10.2022)
Published in Nature communications (07.10.2022)
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Journal Article
Linked-read analysis identifies mutations in single-cell DNA-sequencing data
Bohrson, Craig L., Barton, Alison R., Lodato, Michael A., Rodin, Rachel E., Luquette, Lovelace J., Viswanadham, Vinay V., Gulhan, Doga C., Cortés-Ciriano, Isidro, Sherman, Maxwell A., Kwon, Minseok, Coulter, Michael E., Galor, Alon, Walsh, Christopher A., Park, Peter J.
Published in Nature genetics (01.04.2019)
Published in Nature genetics (01.04.2019)
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ATM-deficiency-induced microglial activation promotes neurodegeneration in ataxia-telangiectasia
Lai, Jenny, Demirbas, Didem, Kim, Junho, Jeffries, Ailsa M., Tolles, Allie, Park, Junseok, Chittenden, Thomas W., Buckley, Patrick G., Yu, Timothy W., Lodato, Michael A., Lee, Eunjung Alice
Published in Cell reports (Cambridge) (23.01.2024)
Published in Cell reports (Cambridge) (23.01.2024)
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H2AZ Is Enriched at Polycomb Complex Target Genes in ES Cells and Is Necessary for Lineage Commitment
Creyghton, Menno P., Markoulaki, Styliani, Levine, Stuart S., Hanna, Jacob, Lodato, Michael A., Sha, Ky, Young, Richard A., Jaenisch, Rudolf, Boyer, Laurie A.
Published in Cell (14.11.2008)
Published in Cell (14.11.2008)
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PaSD-qc: quality control for single cell whole-genome sequencing data using power spectral density estimation
Sherman, Maxwell A, Barton, Alison R, Lodato, Michael A, Vitzthum, Carl, Coulter, Michael E, Walsh, Christopher A, Park, Peter J
Published in Nucleic acids research (28.02.2018)
Published in Nucleic acids research (28.02.2018)
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Journal Article
Somatic mutations in single human cardiomyocytes reveal age-associated DNA damage and widespread oxidative genotoxicity
Choudhury, Sangita, Huang, August Yue, Kim, Junho, Zhou, Zinan, Morillo, Katherine, Maury, Eduardo A, Tsai, Jessica W, Miller, Michael B, Lodato, Michael A, Araten, Sarah, Hilal, Nazia, Lee, Eunjung Alice, Chen, Ming Hui, Walsh, Christopher A
Published in Nature aging (01.08.2022)
Published in Nature aging (01.08.2022)
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Reprogramming of Postnatal Neurons into Induced Pluripotent Stem Cells by Defined Factors
Kim, Jongpil, Lengner, Christopher J., Kirak, Oktay, Hanna, Jacob, Cassady, John P., Lodato, Michael A., Wu, Su, Faddah, Dina A., Steine, Eveline J., Gao, Qing, Fu, Dongdong, Dawlaty, Meelad, Jaenisch, Rudolf
Published in Stem cells (Dayton, Ohio) (01.06.2011)
Published in Stem cells (Dayton, Ohio) (01.06.2011)
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