NuSeT: A deep learning tool for reliably separating and analyzing crowded cells
Yang, Linfeng, Ghosh, Rajarshi P, Franklin, J Matthew, Chen, Simon, You, Chenyu, Narayan, Raja R, Melcher, Marc L, Liphardt, Jan T
Published in PLoS computational biology (01.09.2020)
Published in PLoS computational biology (01.09.2020)
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Journal Article
Mechanisms of Plastic Deformation in Collagen Networks Induced by Cellular Forces
Ban, Ehsan, Franklin, J. Matthew, Nam, Sungmin, Smith, Lucas R., Wang, Hailong, Wells, Rebecca G., Chaudhuri, Ovijit, Liphardt, Jan T., Shenoy, Vivek B.
Published in Biophysical journal (23.01.2018)
Published in Biophysical journal (23.01.2018)
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Journal Article
Concerted localization-resets precede YAP-dependent transcription
Franklin, J. Matthew, Ghosh, Rajarshi P., Shi, Quanming, Reddick, Michael P., Liphardt, Jan T.
Published in Nature communications (11.09.2020)
Published in Nature communications (11.09.2020)
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Journal Article
ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing
Chen, Xingqi, Shen, Ying, Draper, Will, Buenrostro, Jason D, Litzenburger, Ulrike, Cho, Seung Woo, Satpathy, Ansuman T, Carter, Ava C, Ghosh, Rajarshi P, East-Seletsky, Alexandra, Doudna, Jennifer A, Greenleaf, William J, Liphardt, Jan T, Chang, Howard Y
Published in Nature methods (01.12.2016)
Published in Nature methods (01.12.2016)
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Journal Article
Single-molecule superresolution imaging allows quantitative analysis of RAF multimer formation and signaling
Nan, Xiaolin, Collisson, Eric A., Lewis, Sophia, Huang, Jing, Tamgüney, Tanja M., Liphardt, Jan T., McCormick, Frank, Gray, Joe W., Chu, Steven
Published in Proceedings of the National Academy of Sciences - PNAS (12.11.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (12.11.2013)
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Journal Article
Rapid disorganization of mechanically interacting systems of mammary acini
Shi, Quanming, Ghosh, Rajarshi P., Engelke, Hanna, Rycroft, Chris H., Cassereau, Luke, Sethian, James A., Weaver, Valerie M., Liphardt, Jan T.
Published in Proceedings of the National Academy of Sciences - PNAS (14.01.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (14.01.2014)
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Journal Article
Stiff stroma increases breast cancer risk by inducing the oncogene ZNF217
Northey, Jason J, Barrett, Alexander S, Acerbi, Irene, Hayward, Mary-Kate, Talamantes, Stephanie, Dean, Ivory S, Mouw, Janna K, Ponik, Suzanne M, Lakins, Jonathon N, Huang, Po-Jui, Wu, Junmin, Shi, Quanming, Samson, Susan, Keely, Patricia J, Mukhtar, Rita A, Liphardt, Jan T, Shepherd, John A, Hwang, E Shelley, Chen, Yunn-Yi, Hansen, Kirk C, Littlepage, Laurie E, Weaver, Valerie M
Published in The Journal of clinical investigation (01.11.2020)
Published in The Journal of clinical investigation (01.11.2020)
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Journal Article
Selectivity mechanism of the nuclear pore complex characterized by single cargo tracking
Weis, Karsten, Lowe, Alan R, Siegel, Jake J, Kalab, Petr, Siu, Merek, Liphardt, Jan T
Published in Nature (London) (30.09.2010)
Published in Nature (London) (30.09.2010)
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Journal Article
A fluorogenic array for temporally unlimited single-molecule tracking
Ghosh, Rajarshi P., Franklin, J. Matthew, Draper, Will E., Shi, Quanming, Beltran, Bruno, Spakowitz, Andrew J., Liphardt, Jan T.
Published in Nature chemical biology (01.04.2019)
Published in Nature chemical biology (01.04.2019)
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Journal Article
ZnO−Al2O3 and ZnO−TiO2 Core−Shell Nanowire Dye-Sensitized Solar Cells
Law, Matt, Greene, Lori E, Radenovic, Aleksandra, Kuykendall, Tevye, Liphardt, Jan, Yang, Peidong
Published in The journal of physical chemistry. B (16.11.2006)
Published in The journal of physical chemistry. B (16.11.2006)
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Journal Article
Satb1 integrates DNA binding site geometry and torsional stress to differentially target nucleosome-dense regions
Ghosh, Rajarshi P., Shi, Quanming, Yang, Linfeng, Reddick, Michael P., Nikitina, Tatiana, Zhurkin, Victor B., Fordyce, Polly, Stasevich, Timothy J., Chang, Howard Y., Greenleaf, William J., Liphardt, Jan T.
Published in Nature communications (19.07.2019)
Published in Nature communications (19.07.2019)
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Journal Article
A molecular ruler based on plasmon coupling of single gold and silver nanoparticles
Liphardt, Jan, Alivisatos, A Paul, Sönnichsen, Carsten, Reinhard, Björn M
Published in Nature biotechnology (01.06.2005)
Published in Nature biotechnology (01.06.2005)
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Journal Article
Calibration of Dynamic Molecular Rulers Based on Plasmon Coupling between Gold Nanoparticles
Reinhard, Björn M, Siu, Merek, Agarwal, Harish, Alivisatos, A. Paul, Liphardt, Jan
Published in Nano letters (01.11.2005)
Published in Nano letters (01.11.2005)
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Journal Article
Importin-β modulates the permeability of the nuclear pore complex in a Ran-dependent manner
Lowe, Alan R, Tang, Jeffrey H, Yassif, Jaime, Graf, Michael, Huang, William Y C, Groves, Jay T, Weis, Karsten, Liphardt, Jan T
Published in eLife (06.03.2015)
Published in eLife (06.03.2015)
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Journal Article
Optical control of fast and processive engineered myosins in vitro and in living cells
Ruijgrok, Paul V., Ghosh, Rajarshi P., Zemsky, Sasha, Nakamura, Muneaki, Gong, Rui, Ning, Lin, Chen, Robert, Vachharajani, Vipul T., Chu, Alexander E., Anand, Namrata, Eguchi, Raphael R., Huang, Po-Ssu, Lin, Michael Z., Alushin, Gregory M., Liphardt, Jan T., Bryant, Zev
Published in Nature chemical biology (01.05.2021)
Published in Nature chemical biology (01.05.2021)
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Journal Article
Use of plasmon coupling to reveal the dynamics of DNA bending and cleavage by single EcoRV restriction enzymes
Reinhard, Björn M, Sheikholeslami, Sassan, Mastroianni, Alexander, Alivisatos, A. Paul, Liphardt, Jan
Published in Proceedings of the National Academy of Sciences - PNAS (20.02.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (20.02.2007)
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Journal Article