Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA
Kelly, Brendan J, Gross, Robert, Bittinger, Kyle, Sherrill-Mix, Scott, Lewis, James D, Collman, Ronald G, Bushman, Frederic D, Li, Hongzhe
Published in Bioinformatics (01.08.2015)
Published in Bioinformatics (01.08.2015)
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Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents
Hoffmann, Christian, Dollive, Serena, Grunberg, Stephanie, Chen, Jun, Li, Hongzhe, Wu, Gary D, Lewis, James D, Bushman, Frederic D
Published in PloS one (17.06.2013)
Published in PloS one (17.06.2013)
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Role of dietary fiber in the recovery of the human gut microbiome and its metabolome
Tanes, Ceylan, Bittinger, Kyle, Gao, Yuan, Friedman, Elliot S., Nessel, Lisa, Roy Paladhi, Unmesha, Chau, Lillian, Panfen, Erika, Fischbach, Michael A., Braun, Jonathan, Xavier, Ramnik J., Clish, Clary B., Li, Hongzhe, Bushman, Frederic D., Lewis, James D., Wu, Gary D.
Published in Cell host & microbe (10.03.2021)
Published in Cell host & microbe (10.03.2021)
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Associating microbiome composition with environmental covariates using generalized UniFrac distances
JUN CHEN, BITTINGER, Kyle, CHARLSON, Emily S, HOFIFMANN, Christian, LEWIS, James, WU, Gary D, COLLMAN, Ronald G, BUSHMAN, Frederic D, HONGZHE LI
Published in Bioinformatics (15.08.2012)
Published in Bioinformatics (15.08.2012)
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Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
Wu, Gary D., Chen, Jun, Hoffmann, Christian, Bittinger, Kyle, Chen, Ying-Yu, Keilbaugh, Sue A., Bewtra, Meenakshi, Knights, Dan, Walters, William A., Knight, Rob, Sinha, Rohini, Gilroy, Erin, Gupta, Kernika, Baldassano, Robert, Nessel, Lisa, Li, Hongzhe, Bushman, Frederic D., Lewis, James D.
Published in Science (American Association for the Advancement of Science) (07.10.2011)
Published in Science (American Association for the Advancement of Science) (07.10.2011)
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Long noncoding RNA NORAD, a novel competing endogenous RNA, enhances the hypoxia-induced epithelial-mesenchymal transition to promote metastasis in pancreatic cancer
Li, Hongzhe, Wang, Xinjing, Wen, Chenlei, Huo, Zhen, Wang, Weishen, Zhan, Qian, Cheng, Dongfeng, Chen, Hao, Deng, Xiaxing, Peng, Chenghong, Shen, Baiyong
Published in Molecular cancer (09.11.2017)
Published in Molecular cancer (09.11.2017)
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Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota
Albenberg, Lindsey, Esipova, Tatiana V, Judge, Colleen P, Bittinger, Kyle, Chen, Jun, Laughlin, Alice, Grunberg, Stephanie, Baldassano, Robert N, Lewis, James D, Li, Hongzhe, Thom, Stephen R, Bushman, Frederic D, Vinogradov, Sergei A, Wu, Gary D
Published in Gastroenterology (New York, N.Y. 1943) (01.11.2014)
Published in Gastroenterology (New York, N.Y. 1943) (01.11.2014)
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The human gut virome: inter-individual variation and dynamic response to diet
Minot, Samuel, Sinha, Rohini, Chen, Jun, Li, Hongzhe, Keilbaugh, Sue A, Wu, Gary D, Lewis, James D, Bushman, Frederic D
Published in Genome research (01.10.2011)
Published in Genome research (01.10.2011)
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A Deep Learning Model for Classification of Parotid Neoplasms Based on Multimodal Magnetic Resonance Image Sequences
Liu, Xu, Pan, Yucheng, Zhang, Xin, Sha, Yongfang, Wang, Shihui, Li, Hongzhe, Liu, Jianping
Published in The Laryngoscope (01.02.2023)
Published in The Laryngoscope (01.02.2023)
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Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
Lewis, James D., Chen, Eric Z., Baldassano, Robert N., Otley, Anthony R., Griffiths, Anne M., Lee, Dale, Bittinger, Kyle, Bailey, Aubrey, Friedman, Elliot S., Hoffmann, Christian, Albenberg, Lindsey, Sinha, Rohini, Compher, Charlene, Gilroy, Erin, Nessel, Lisa, Grant, Amy, Chehoud, Christel, Li, Hongzhe, Wu, Gary D., Bushman, Frederic D.
Published in Cell host & microbe (14.10.2015)
Published in Cell host & microbe (14.10.2015)
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