Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy
Koren, Omry, Goodrich, Julia K., Cullender, Tyler C., Spor, Aymé, Laitinen, Kirsi, Kling Bäckhed, Helene, Gonzalez, Antonio, Werner, Jeffrey J., Angenent, Largus T., Knight, Rob, Bäckhed, Fredrik, Isolauri, Erika, Salminen, Seppo, Ley, Ruth E.
Published in Cell (03.08.2012)
Published in Cell (03.08.2012)
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Genetic Determinants of the Gut Microbiome in UK Twins
Goodrich, Julia K., Davenport, Emily R., Beaumont, Michelle, Jackson, Matthew A., Knight, Rob, Ober, Carole, Spector, Tim D., Bell, Jordana T., Clark, Andrew G., Ley, Ruth E.
Published in Cell host & microbe (11.05.2016)
Published in Cell host & microbe (11.05.2016)
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Sphingolipids in host–microbial interactions
Heaver, Stacey L, Johnson, Elizabeth L, Ley, Ruth E
Published in Current opinion in microbiology (01.06.2018)
Published in Current opinion in microbiology (01.06.2018)
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Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
Youngblut, Nicholas D, Reischer, Georg H, Walters, William, Schuster, Nathalie, Walzer, Chris, Stalder, Gabrielle, Ley, Ruth E, Farnleitner, Andreas H
Published in Nature communications (16.05.2019)
Published in Nature communications (16.05.2019)
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Microbiome and metabolic disease: revisiting the bacterial phylum Bacteroidetes
Johnson, Elizabeth L., Heaver, Stacey L., Walters, William A., Ley, Ruth E.
Published in Journal of Molecular Medicine (01.01.2017)
Published in Journal of Molecular Medicine (01.01.2017)
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Book Review
Selection on soil microbiomes reveals reproducible impacts on plant function
Panke-Buisse, Kevin, Poole, Angela C, Goodrich, Julia K, Ley, Ruth E, Kao-Kniffin, Jenny
Published in The ISME Journal (17.03.2015)
Published in The ISME Journal (17.03.2015)
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A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
Koren, Omry, Knights, Dan, Gonzalez, Antonio, Waldron, Levi, Segata, Nicola, Knight, Rob, Huttenhower, Curtis, Ley, Ruth E
Published in PLoS computational biology (01.01.2013)
Published in PLoS computational biology (01.01.2013)
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Diversity and heritability of the maize rhizosphere microbiome under field conditions
Peiffer, Jason A., Spor, Aymé, Koren, Omry, Jin, Zhao, Tringe, Susannah Green, Dangl, Jeffery L., Buckler, Edward S., Ley, Ruth E.
Published in Proceedings of the National Academy of Sciences - PNAS (16.04.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (16.04.2013)
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Defining the core Arabidopsis thaliana root microbiome
LUNDBERG, Derek S, LEBEIS, Sarah L, EDGAR, Robert C, EICKHORST, Thilo, LEY, Ruth E, HUGENHOLTZ, Philip, TRINGE, Susannah Green, DANGL, Jeffery L, PAREDES, Sur Herrera, YOURSTONE, Scott, GEHRING, Jase, MALFATTI, Stephanie, TREMBLAY, Julien, ENGELBREKTSON, Anna, KUNIN, Victor, DEL RIO, Tijana Glavina
Published in Nature (London) (02.08.2012)
Published in Nature (London) (02.08.2012)
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Sphingolipids produced by gut bacteria enter host metabolic pathways impacting ceramide levels
Johnson, Elizabeth L, Heaver, Stacey L, Waters, Jillian L, Kim, Benjamin I, Bretin, Alexis, Goodman, Andrew L, Gewirtz, Andrew T, Worgall, Tilla S, Ley, Ruth E
Published in Nature communications (18.05.2020)
Published in Nature communications (18.05.2020)
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Large-scale replicated field study of maize rhizosphere identifies heritable microbes
Walters, William A., Jin, Zhao, Youngblut, Nicholas, Wallace, Jason G., Sutter, Jessica, Zhang, Wei, González-Peña, Antonio, Peiffer, Jason, Koren, Omry, Shi, Qiaojuan, Knight, Rob, del Rio, Tijana Glavina, Tringe, Susannah G., Buckler, Edward S., Dangl, Jeffery L., Ley, Ruth E.
Published in Proceedings of the National Academy of Sciences - PNAS (10.07.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (10.07.2018)
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Human genetics shape the gut microbiome
Goodrich, Julia K, Waters, Jillian L, Poole, Angela C, Sutter, Jessica L, Koren, Omry, Blekhman, Ran, Beaumont, Michelle, Van Treuren, William, Knight, Rob, Bell, Jordana T, Spector, Timothy D, Clark, Andrew G, Ley, Ruth E
Published in Cell (06.11.2014)
Published in Cell (06.11.2014)
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Host genetic variation impacts microbiome composition across human body sites
Blekhman, Ran, Goodrich, Julia K, Huang, Katherine, Sun, Qi, Bukowski, Robert, Bell, Jordana T, Spector, Timothy D, Keinan, Alon, Ley, Ruth E, Gevers, Dirk, Clark, Andrew G
Published in Genome Biology (15.09.2015)
Published in Genome Biology (15.09.2015)
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Proton pump inhibitors alter the composition of the gut microbiota
Jackson, Matthew A, Goodrich, Julia K, Maxan, Maria-Emanuela, Freedberg, Daniel E, Abrams, Julian A, Poole, Angela C, Sutter, Jessica L, Welter, Daphne, Ley, Ruth E, Bell, Jordana T, Spector, Tim D, Steves, Claire J
Published in Gut (01.05.2016)
Published in Gut (01.05.2016)
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Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome
Chassaing, Benoit, Compher, Charlene, Bonhomme, Brittaney, Liu, Qing, Tian, Yuan, Walters, William, Nessel, Lisa, Delaroque, Clara, Hao, Fuhua, Gershuni, Victoria, Chau, Lillian, Ni, Josephine, Bewtra, Meenakshi, Albenberg, Lindsey, Bretin, Alexis, McKeever, Liam, Ley, Ruth E., Patterson, Andrew D., Wu, Gary D., Gewirtz, Andrew T., Lewis, James D.
Published in Gastroenterology (New York, N.Y. 1943) (01.03.2022)
Published in Gastroenterology (New York, N.Y. 1943) (01.03.2022)
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Succession of microbial consortia in the developing infant gut microbiome
Koenig, Jeremy E, Spor, AymÃ, Scalfone, Nicholas, Fricker, Ashwana D, Stombaugh, Jesse, Knight, Rob, Angenent, Largus T, Ley, Ruth E
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2011)
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